Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016618 pacid=23143920 polypeptide=Lus10016618 locus=Lus10016618.g ID=Lus10016618.BGIv1.0 annot-version=v1.0 ATGACAGGTGGTCTGCCATTTGGCACACGATCCGAAACAGTGGAGATGAAGACGAAAGTCCTGACAACCGAGCTTCTGTGGGGTTTGTGGTGGGCAGGCA GAAATATGGTTGGAGGAAGAAATCATGGCCTAGTTGTTGCAGTAATAGTAGTAGTAGTGGTGGTGGTCTGTAACCTGAAATGTGATGCGACAAGGAAATC CGCCTGGGATGTTGTACCTCCAGGTTGCATGAACTGCACAATATGCCCATATTTATGTCACCCTGCTGCAACTCCACCGCCTCCTCCAGAAATCCCAGAC TACCCAATAGGAGGAGTTCCACCCCCGCCGCCAGGAACACTCCCTTACCCCTCAGATGTAGTTCCTCCCCCTCCGCCATCAAACTGCACCACGGTTACTG TGCAGTGCTGTCAATATACCCCTCCCATGGGGGGATTTGGGGGATACCAGCCTCAGCCTGTTACTCCTCCCTCTGGATATGGGTACCAGCCTGTTGGCAA TTACTCTGCCACTCTCTTGTCACCTCCCCGTTTCATATATGTTGTTATTATGGTCTTATTGTTACTCTGCTCTACTTTCTGCTCTTTCCTGGGTTAA
AA sequence Show only first row Show all	>Lus10016618 pacid=23143920 polypeptide=Lus10016618 locus=Lus10016618.g ID=Lus10016618.BGIv1.0 annot-version=v1.0 MTGGLPFGTRSETVEMKTKVLTTELLWGLWWAGRNMVGGRNHGLVVAVIVVVVVVVCNLKCDATRKSAWDVVPPGCMNCTICPYLCHPAATPPPPPEIPD YPIGGVPPPPPGTLPYPSDVVPPPPPSNCTTVTVQCCQYTPPMGGFGGYQPQPVTPPSGYGYQPVGNYSATLLSPPRFIYVVIMVLLLLCSTFCSFLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016618 [exp]	0	1
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10040167 [exp]	8.5	0.7087
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	13.1	0.8205
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	15.1	0.7647
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	15.7	0.8134
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10037198 [exp]	16.2	0.8252
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010714 [exp]	20.7	0.7977
AT5G53880			unknown protein		Lus10000796 [exp]	21.0	0.8087
AT5G27780			SAUR-like auxin-responsive pro...		Lus10023969 [exp]	29.5	0.8184
					Lus10008292 [exp]	31.0	0.7539
AT2G17650			AMP-dependent synthetase and l...		Lus10041825 [exp]	32.3	0.7994

Compare expression of checked genes

Lus10016618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.