Plant FIBer expression Database

Lus10016619 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G55760 672 / 0 SRT1 sirtuin 1 (.1)
AT5G09230 102 / 9e-24 AtSRT2, SRT2 sirtuin 2 (.1.2.3.4.5.6.7)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029531
[exp]
86 / 6e-18 AT5G09230 543 / 0.0 sirtuin 2 (.1.2.3.4.5.6.7)
Lus10039614
[exp]
78 / 4e-15 AT5G09230 457 / 7e-161 sirtuin 2 (.1.2.3.4.5.6.7)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G368100
[exp]
704 / 0 AT5G55760 683 / 0.0 sirtuin 1 (.1)
Potri.005G068400
[exp]
90 / 2e-19 AT5G09230 487 / 4e-173 sirtuin 2 (.1.2.3.4.5.6.7)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0085 FAD_DHS PF02146 SIR2 Sir2 family
Representative CDS sequence
>Lus10016619 pacid=23143939 polypeptide=Lus10016619 locus=Lus10016619.g ID=Lus10016619.BGIv1.0 annot-version=v1.0
ATGTCTATAGGCTACGCTGAGAAGCTCTCCTACATTGAGGATGTGGGCAGCGTTGGGATGGCTGAATTTTTCGACCCATCCAGCCTTCTCCAAGAAAAAA
TTGGACGACTGGCCAAGATGATACAAAAGAGTAAGCATCTGGTGGTCTTCACAGGTGCAGGAATATCAACGGCTTGTGGGATTCCGGATTTTCGAGGGCC
TAAAGGAATATGGACTCTTCAGCGGGAGGGCAAAGCTCTGCCTCAAGCAGCACTACCTTTTCATAGAGCAATGCCAAGCATTACACATATGGCATTGGTC
GAACTTGAGAAAGCTGGCATTTTGAAGTTTGTTATTAGTCAGAATGTTGATGGCCTACATCTGAGATCCGGAATTCCAAGGGAAAAGCTCTCTGAGCTGC
ACGGGAATTCTTTCCTGGAACAATGTCGGTTATGTGGAGCTGAGTACTTTCGGGATTTCGAAGTGGAAACTATAGGACTGAAGGAGACATCGCGACGTTG
CTCTGATTTGAATTGTGGAGCAAAACTAAAGGATACGGTGCTTGATTGGGAGGATGCATTGCCTGACAAAGAAATGCTTCCTGCCGAGAAGCATTGTAGG
ATGGCCGACGTTGTATTATGTTTGGGGACAAGTCTGCAGATAACCCCAGCTTGCAACTTGCCTCTGAAATGTCTTCGTGGTGGTGGAAAAATTGTAATTG
TGAATCTTCAGAAAACCCCAAAGGATAAGAAGGCATGTTTGGTGATCCATGGATTGGTGGATAAGGTTATCACAGGAGTGATGGAAGCCCTTAGTATGCG
AATTCTTCCATTTGTTAGGATCGATGAGTTCCAGATCATCATGACCCAGTCCTTGAGTGCAGATAAAAAGTTTGTTAACTGGACAATCCGAGTGGGAAGT
GTACATGGATCAAAATCACCGTTGCCATTCATCAAGTCCATTAAGGTTGCTTTTACTGGTGAGCAAAACTACAAAGCAGCTGTCCTAGATGAACAACCAT
TTAATATTAAAAGAAGGACCATGACAACGGAGTCATTTGAGATTGTGTTGAATATCAACCTGAGCGACGGATGTGGTTGCGTAGCTACTCAAATCAACAT
CCCATTCGGACTAAAGGACTCAACCGAGTGCTTGGAGGTTGAGAAGGATATGATAATCCAGAATATGAGGGAGAAGGCAAGCGAAGAATCATCATGGTGT
GGACATGCAGCAGTAGTGGAAAGGAAGAGGTTGTTAGAACCGAAATCTGAGGTTACAACCTACTGCATTGTGACCAACATCAAGTCATTCAACATGAGCA
ATGGAGATGTTGAGAAGGTAAGAGAAGGTTTGAGCGATAGTCGAGTATCACGACCACGATCTTCAAACAACCGGAAGAGGAAGTCAAGAGCATAG
AA sequence
>Lus10016619 pacid=23143939 polypeptide=Lus10016619 locus=Lus10016619.g ID=Lus10016619.BGIv1.0 annot-version=v1.0
MSIGYAEKLSYIEDVGSVGMAEFFDPSSLLQEKIGRLAKMIQKSKHLVVFTGAGISTACGIPDFRGPKGIWTLQREGKALPQAALPFHRAMPSITHMALV
ELEKAGILKFVISQNVDGLHLRSGIPREKLSELHGNSFLEQCRLCGAEYFRDFEVETIGLKETSRRCSDLNCGAKLKDTVLDWEDALPDKEMLPAEKHCR
MADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKACLVIHGLVDKVITGVMEALSMRILPFVRIDEFQIIMTQSLSADKKFVNWTIRVGS
VHGSKSPLPFIKSIKVAFTGEQNYKAAVLDEQPFNIKRRTMTTESFEIVLNINLSDGCGCVATQINIPFGLKDSTECLEVEKDMIIQNMREKASEESSWC
GHAAVVERKRLLEPKSEVTTYCIVTNIKSFNMSNGDVEKVREGLSDSRVSRPRSSNNRKRKSRA

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G55760 SRT1 sirtuin 1 (.1) Lus10016619
[exp]
0 1
AT3G07740 HXA2, HXA02, HA... homolog of yeast ADA2 2A (.1.2... Lus10000540
[exp]
1.4 0.8836
AT3G56160 Sodium Bile acid symporter fam... Lus10043443
[exp]
2.4 0.8690
AT3G29270 RING/U-box superfamily protein... Lus10003473
[exp]
3.2 0.8708
AT5G24060 Pentatricopeptide repeat (PPR)... Lus10027532
[exp]
4.0 0.8864
AT1G52240 PIRF1, ATROPGEF... phytochrome interacting RopGEF... Lus10037551
[exp]
4.6 0.8686
AT2G03620 AtMRS2-5, AtMGT... magnesium transporter 3 (.1.2) Lus10037081
[exp]
4.9 0.8649
AT1G73350 unknown protein Lus10042294
[exp]
6.2 0.8784
AT1G32070 ATNSI nuclear shuttle interacting (.... Lus10035604
[exp]
6.6 0.8764
AT1G72050 C2H2ZnF TFIIIA transcription factor IIIA (.1.... Lus10037673
[exp]
6.7 0.8639
AT2G46910 Plastid-lipid associated prote... Lus10010277
[exp]
8.8 0.8593

Lus10016619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.