Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13180 718 / 0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT4G26600 114 / 2e-26 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55920 110 / 2e-25 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G26180 86 / 1e-17 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G40000 71 / 1e-12 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G22400 70 / 2e-12 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G06560 59 / 4e-09 NOL1/NOP2/sun family protein (.1) AT5G66180 50 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022523 [exp] 380 / 1e-129 AT3G13180 323 / 1e-107 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10023095 [exp] 108 / 1e-24 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032368 [exp] 107 / 2e-24 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025004 [exp] 94 / 3e-20 AT5G26180 566 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10026452 [exp] 90 / 8e-19 AT5G26180 567 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020217 [exp] 72 / 8e-13 AT2G22400 975 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020761 [exp] 58 / 2e-08 AT1G06560 714 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10007337 [exp] 57 / 2e-08 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10026840 [exp] 54 / 2e-07 AT4G40000 954 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G368500 [exp] 767 / 0 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.001G369600 [exp] 125 / 2e-30 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G224000 [exp] 96 / 1e-20 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G096100 [exp] 70 / 3e-12 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G204900 [exp] 58 / 1e-08 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1) Potri.007G056800 [exp] 45 / 0.0001 AT5G66180 502 / 2e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0633 [flax] [poplar] NusB PF01029 [flax] [poplar] NusB NusB family CL0063 [flax] [poplar] NADP_Rossmann PF01189 [flax] [poplar] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Lus10016622 pacid=23143933 polypeptide=Lus10016622 locus=Lus10016622.g ID=Lus10016622.BGIv1.0 annot-version=v1.0 ATGGCGCATCCGCTTTCCCTCCATGCCTGTCTTATTGCTGAGTCGCGGGACGCCGCAGCCCCCAGACCGCAGAGATTCTCAAAGACAGCCCACAAGCTCA AGGCATCAGTTTCCATCCCTAAAAACGTTAGAACCCCGAGAGAAACCCAGAAGTTGAATTTGGAGGTTTCCCCTCACAGAGCTGTGTCTGCTGTAAGGTT GATGAGAATAGAGATGGGTGGTGCATTTGCTGACTTATTGAATGAGAAGGGAAAAGGTTCTGGCGAGAATGAAATGGGATATGTCGGAAGAACGCTTGGA TTTCGTACCAAGGAGTTGGATGATCGAGACCTTAGATTGGTCACGGATGTAGTTGGAGGTACCATTCGTTGGAGGAAGTATATTGATCACTTAATTTGCT CATTGTGCCATGATGACAAGATATTTAGGAGAATGGAACCTCTTCTCGTGCAGATCCTCCGGATTGGATTTTATGAAATTCTGAAGCTAGAAATGCCACC CTATGCTGTTGTGGATGAGAACGTTAGACTAGCAAAGCTTGCCCTTAGACCTGGTGCTGGTAATCTGGTCAATGGCATTCTTAGAAAGCTATTGTTGCTC AAGGAAAGTGACTCCCTTCCTCTACCCAAAGCTGAAGGTGATGATCGGGCACAAGCACGTGCTCTTGCTACTATTCATTCTCATCCTGTGTGGATGGTTA GGCGTTGGACTAAGTATATTGGCCAAGAAGATACAGTTAGGTTACTGGTTTGGAACAACAGTGACCCCAGTTTCAGCTTAAGGGCAAACTGTGGAAAAGG AGTTGCAAGAGCTGACCTTGTGAAGCAACTTGATCTGTTGAAGGTACCTTATGAGCTCTCTTTGCATTTGGATGATTTTGTCCGGATGAAAACTGGATTG CAGACAGTTTTACAAGCTGGATTGCTGAAGCAAGGTCTATGTGCAGTTCAGGATGAGAGTGCAGGCATGGTAGTTTCTGTTGTGGATCCTCAACCAAATG AGACCATTATCGACTGTTGTGCAGCTCCTGGAGGGAAGACACTTTATATGGCATCTTTGATGAAAAATAAAGGCAAGGTATATGCAATTGATGTGAACAA AGGCCGGTTGCGAATTCTTAAGGAGACCGCCAAGATGCATCAAGTTGATAGGATGATCACTACAGTAGCTGCTGATCTTCGTGAATTTTCCGAGCAAACT AAAGAGAAATATGATAAAGTTTTGCTGGATGTTCCATGTTCTGGGCTTGGTGTTCTCTCCAAGAGGGCAGATTTGAGATGGAACAGAAGGCTAGAGGATC TGGAAGAACTTAAGATTCTGCAGGATGAGCTCCTGAATGCAGCTTCTGCGTTGGTAAAGCCTGATGGAGTACTAGTATATAGTACCTGTTCGATAGATCC AGAAGAAAATGAAGAAAGAGTGGAAGCATTTCTCCTCAGGCATCCTGAATTTCGCATAGATCCAGTTGAGAGATGGGTTCCAGCTTCTTTTGTGACGGAT CGGGGTTACTTCTCATCCCACCCGGTGAAACATTCGCTAGATGGAGCGTTTGCAGCTAGGCTGGTCCGTACTACCACTGCAATGCCAAAATGA
AA sequence Show only first row Show all	>Lus10016622 pacid=23143933 polypeptide=Lus10016622 locus=Lus10016622.g ID=Lus10016622.BGIv1.0 annot-version=v1.0 MAHPLSLHACLIAESRDAAAPRPQRFSKTAHKLKASVSIPKNVRTPRETQKLNLEVSPHRAVSAVRLMRIEMGGAFADLLNEKGKGSGENEMGYVGRTLG FRTKELDDRDLRLVTDVVGGTIRWRKYIDHLICSLCHDDKIFRRMEPLLVQILRIGFYEILKLEMPPYAVVDENVRLAKLALRPGAGNLVNGILRKLLLL KESDSLPLPKAEGDDRAQARALATIHSHPVWMVRRWTKYIGQEDTVRLLVWNNSDPSFSLRANCGKGVARADLVKQLDLLKVPYELSLHLDDFVRMKTGL QTVLQAGLLKQGLCAVQDESAGMVVSVVDPQPNETIIDCCAAPGGKTLYMASLMKNKGKVYAIDVNKGRLRILKETAKMHQVDRMITTVAADLREFSEQT KEKYDKVLLDVPCSGLGVLSKRADLRWNRRLEDLEELKILQDELLNAASALVKPDGVLVYSTCSIDPEENEERVEAFLLRHPEFRIDPVERWVPASFVTD RGYFSSHPVKHSLDGAFAARLVRTTTAMPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10016622 [exp]	0	1
					Lus10006129 [exp]	2.4	0.9003
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	3.7	0.9133
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10016125 [exp]	5.5	0.8831
AT5G23690			Polynucleotide adenylyltransfe...		Lus10036013 [exp]	6.0	0.8979
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10036027 [exp]	7.3	0.9113
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	13.5	0.8825
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10035045 [exp]	20.0	0.8817
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028726 [exp]	20.1	0.8843
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005489 [exp]	20.4	0.8664
AT5G26880		AGL26	AGAMOUS-like 26 (.1.2)		Lus10015701 [exp]	25.9	0.8593

Compare expression of checked genes

Lus10016622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.