Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07680 320 / 2e-112 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G22845 122 / 2e-34 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G26690 42 / 8e-05 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 42 / 0.0001 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022525 [exp] 420 / 4e-152 AT3G07680 320 / 1e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10043160 [exp] 372 / 4e-128 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10032588 [exp] 358 / 3e-127 AT3G07680 305 / 3e-106 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10006360 [exp] 258 / 5e-88 AT3G07680 268 / 5e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10012315 [exp] 257 / 1e-87 AT3G07680 263 / 8e-90 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036603 [exp] 254 / 2e-86 AT3G07680 259 / 9e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10035821 [exp] 251 / 3e-85 AT3G07680 254 / 1e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10039381 [exp] 117 / 9e-33 AT3G22845 350 / 1e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10006623 [exp] 117 / 2e-32 AT3G22845 349 / 5e-124 emp24/gp25L/p24 family/GOLD family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369000 [exp] 337 / 3e-119 AT3G07680 315 / 2e-110 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G081700 [exp] 119 / 1e-33 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 43 / 4e-05 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10016624 pacid=23143941 polypeptide=Lus10016624 locus=Lus10016624.g ID=Lus10016624.BGIv1.0 annot-version=v1.0 ATGAGAGGAGTTTTCATTGTGGTGCTTGTGGCAATCTGTTTGATACCCCAAGAGGTGTTGGGGATAAGATTTGTGATTGATAGGGAAGAATGCTTCTCTC ATGATGTCAAGTATGATGGGGACACGGTTCATGTCTCCTTTGTGGTGATAAAGGTCGATTCGTCTTGGGATCGTAGTACCGATGGAATTGATCTTGTGAT CAAGGGGCCTACCGGTGAACAAATCCATGATTTTCGTGACAAAATCAGCGAGAAGCATGAGTTTGTGGCTCATCAAAAAGGAGTCCATCGTTTTTGTTTC ATTAATAAGTCTCCCTACCACGAGACTATAGACTTTGATGTTCATGTAGCCCACTTTTCGTACTATGAGGAGCATGCAAAGGATGAGCATTTGAAGCCGC TTATAGAGCAGATATCAAAGTTGGAGGATGCACTTTACAACATCCAATTTGAACAGCATTGGCTAGAGGCACAGACTGAACGCCAGGCTTTAATAAATGA TGCAATGGGACGAAGGGCTGTTCATAAGGCATTCTTCGAATCAGCAGCACTGGTCGGGGCAAGTGTGGTCCAAGTTTACCTTCTCCGGCGACTTTTTGAG AGGAAGATGGGGATGTCTAGGGTCTAG
AA sequence Show only first row Show all	>Lus10016624 pacid=23143941 polypeptide=Lus10016624 locus=Lus10016624.g ID=Lus10016624.BGIv1.0 annot-version=v1.0 MRGVFIVVLVAICLIPQEVLGIRFVIDREECFSHDVKYDGDTVHVSFVVIKVDSSWDRSTDGIDLVIKGPTGEQIHDFRDKISEKHEFVAHQKGVHRFCF INKSPYHETIDFDVHVAHFSYYEEHAKDEHLKPLIEQISKLEDALYNIQFEQHWLEAQTERQALINDAMGRRAVHKAFFESAALVGASVVQVYLLRRLFE RKMGMSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10016624 [exp]	0	1
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10041182 [exp]	1.0	0.8581
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Lus10042480 [exp]	2.4	0.8461
AT1G50740			Transmembrane proteins 14C (.1...		Lus10019624 [exp]	3.5	0.8385
AT1G48440			B-cell receptor-associated 31-...		Lus10001080 [exp]	3.7	0.8469
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10035094 [exp]	5.0	0.8240
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10024418 [exp]	9.8	0.8237
AT1G48440			B-cell receptor-associated 31-...		Lus10040126 [exp]	10.0	0.7983
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10015954 [exp]	12.4	0.8039
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	13.6	0.8057
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10034442 [exp]	15.2	0.7774

Compare expression of checked genes

Lus10016624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.