Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55850 755 / 0 ATCSLE1 cellulose synthase like E1 (.1) AT4G24000 428 / 2e-139 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT4G23990 427 / 7e-139 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT4G24010 425 / 8e-138 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT5G17420 367 / 2e-113 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G15290 337 / 1e-104 ATCSLB5, ATCSLB05 CELLULOSE SYNTHASE LIKE 5, Cellulose synthase family protein (.1) AT2G32530 334 / 2e-103 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT2G32610 325 / 5e-100 ATCSLB1, ATCSLB01 CELLULOSE SYNTHASE LIKE B1, cellulose synthase-like B1 (.1) AT2G32620 323 / 2e-99 ATCSLB2, ATCSLB02 CELLULOSE SYNTHASE LIKE B2, cellulose synthase-like B (.1) AT2G32540 321 / 2e-98 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032415 [exp] 444 / 2e-145 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10003196 [exp] 430 / 8e-140 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023057 [exp] 426 / 1e-138 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023056 [exp] 397 / 3e-127 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10006161 [exp] 357 / 6e-109 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10026568 [exp] 312 / 5e-92 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10030035 [exp] 272 / 2e-79 AT2G32540 669 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Lus10007296 [exp] 274 / 3e-79 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10029245 [exp] 274 / 5e-79 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369100 [exp] 879 / 0 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.006G004300 [exp] 773 / 0 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.003G142400 [exp] 460 / 1e-151 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.010G074700 [exp] 447 / 8e-147 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.003G142500 [exp] 442 / 7e-145 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.006G004166 [exp] 407 / 2e-136 AT1G55850 429 / 1e-145 cellulose synthase like E1 (.1) Potri.010G074800 [exp] 400 / 1e-128 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.014G155300 [exp] 381 / 3e-121 AT2G32540 711 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.002G227300 [exp] 375 / 8e-119 AT2G32540 712 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.018G103900 [exp] 358 / 6e-110 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10016625 pacid=23143978 polypeptide=Lus10016625 locus=Lus10016625.g ID=Lus10016625.BGIv1.0 annot-version=v1.0 ATGGAGGAGAGAAACAGTAATGATCATGAGCAGAAATATATCCCACTGTTCGAGACAACCAGAGCCAACAGCAAATCTCTTTTACTGTACAAGCTCTTCG CCGCCACCATCTTCTTCGGTATATGCTCCGTATGGACTTACCGCCTCACTCATGTCCTCGACAAACAGGGCAGCATCGGCTGGATTTGGGTGGGAGCTCT AGCAGCCGAGATTTGGTTCGGTCTGTACTGGGTCCTCACCCAAGCTTTGCGATGGAACCCAGTCTACCGGTCCACCCACAAAGACCGGCTACCCAGTTCG GGTCTCCCCGGTGTGGACGTGTTCGTGTGCACTGCGGACCACACAATCGAGCCTCCGCTCATGGTGGTCAACACCGTGCTATCTGTCATGGCCTACGACT ACCCTCCCGACAAGTTGGCCGTTTATCTCTCCGATGACGGCGCATCTCAGTTCACGCTCTATGCGTTGTTGGAGGCATCTCGGTTTGCTGCCAGCTGGGT ACCCTTCTGCCGGAGATTTGAGGTGAAGCCCAGGTCCCCAGAAGCCTTTTTCGCGGCGGGTGTGCCTGTAGATAACGAGGCAATGGATCGCGGTTGGGAG GAGGAGTTGGTCGTCGTCAAGAAACTATACGAAGAAATGAAGGATAGAATTGAAATAGCAACCAAGGTTGGTAAAATTCCAGAAGAAGAGAAAGCATTAT TCTCTGAATGGGAGAGCAATGACGGTAGCATTTCTTCTTCTTCTTCTTCTTGGAAACGCGACCATCCCACCATTCTACAAATATTGATTGATGGGAGAGA GTCATTTAAGAATGGAAGCATCTGGCTGCCTACACTTGTGTACATGGCAAGGGAAAAGCGACCAAACTACCACCACAACTTCAAAGCCGGCGCCATGAAT GCACTCATAAGAGTGTCGTCGAAGATGAGCAATGCACCAATCCTGTTGAACCTTGATTGCGACATGTACTCCAACGATCCCTCAACCTTAAAGGATGCAC TCTGCTTCTTTATGGACGAGGAGAAGAACCGTGACATTGCATATCTCCAGTTCCCTCAAATGTTCGACAATGTTACTAAGAATGACATCTACGGCTCTTC CTTACTAGTAATCTCCGAGGTTGAGTTCCCTGGCATTGATGGTTATGGAGGACCTCTATATATTGGCTCTGGAGCATTCCACAGGAGAGATACTTTGTGT GGAAGAGCCTTCAATCCCAATGACTCCAAGCTAGATTGGCGCATTTACGGTAGAGATGAACGTATCCAAAGTTCGAGTGTCCAACAATTGGTAGAAGAAG CTACTTGTTTGGCAGATTGTGCTTCTGAGGACAACTCTCAATGGGGTAAACAGATGGGCTTGAAATATGGGTGTCCAGTAGAAGATGTAATAACAGGGCT ATCCATACACTGTAGAGGATGGAATTCAGTGTATTACAATCCAAAGAGGGAAGCATTCTTGGGGAAAGCTCCAACAACATGGCCTCAGTCACTGGTTCAA CATAAGAGGTGGTCTGAAGGAGATTTCCAAATCCTCTTCTCAAAGTTTAGTCCAGCTTGGTATGCTAATGGAAAGATTAACGTGGGACTCCAGATGACGT ACCTCTGCTATTGTTTGTGGGCACCAAACTGCTTGCCTGTTCTCTATTACTCCATCGTCTGCTTGCCTGTTCTCTATTACTCCATCGTCCCTTCCCTCTG TCTCCTCAAAGGAATCCCGCTCTTTCCAGGGGTTTCAAGTCCGTGGTTTCTCCCCTTCGCATATCTCATACTTGCTGAGTCCATGTACAGCCTAGTCGAG TTCCTCAGCTGCGGAGGCACCACCCTAGGGTGGTGGAATGAGCAGAGGACGTGGTTGTACAAGAGAACATGTTCCTACCTTTTCGCATTCGTCGACACCA TCTTCAAGATGGCTGGATTCGGAGAGTCTGGATTTGTTGTCACGGCTAAGGTGGCTGATGATGATGTGGCGCAACGATATGGGCAGGAGGTTATGGAGTT TGGATCCTCTTCTGCAATGTTCAATATCTTAGGCACTGTTGGAATGCTTAACCTGATGTGCCTTGTTGGAGTGGTGAAGAGATTAGTGGTGGGTGTGGAT GAGAATATCAGAGTGTTTGATGAAATGGGTTTGCAGATTTTGCTTTGTGGTGTTTTAGTTCTCATCAATTGGCCTCTTTACCAAGCTATTTTCTTCAGGG TGGATAAGGGCAGGATGCCTGCTTCTGTAGCAGTCAAAGCTTTTGCTTTTGCTTTTCTTGCTTGCATTAGCTTTGTGCTCTTCTTTTGA
AA sequence Show only first row Show all	>Lus10016625 pacid=23143978 polypeptide=Lus10016625 locus=Lus10016625.g ID=Lus10016625.BGIv1.0 annot-version=v1.0 MEERNSNDHEQKYIPLFETTRANSKSLLLYKLFAATIFFGICSVWTYRLTHVLDKQGSIGWIWVGALAAEIWFGLYWVLTQALRWNPVYRSTHKDRLPSS GLPGVDVFVCTADHTIEPPLMVVNTVLSVMAYDYPPDKLAVYLSDDGASQFTLYALLEASRFAASWVPFCRRFEVKPRSPEAFFAAGVPVDNEAMDRGWE EELVVVKKLYEEMKDRIEIATKVGKIPEEEKALFSEWESNDGSISSSSSSWKRDHPTILQILIDGRESFKNGSIWLPTLVYMAREKRPNYHHNFKAGAMN ALIRVSSKMSNAPILLNLDCDMYSNDPSTLKDALCFFMDEEKNRDIAYLQFPQMFDNVTKNDIYGSSLLVISEVEFPGIDGYGGPLYIGSGAFHRRDTLC GRAFNPNDSKLDWRIYGRDERIQSSSVQQLVEEATCLADCASEDNSQWGKQMGLKYGCPVEDVITGLSIHCRGWNSVYYNPKREAFLGKAPTTWPQSLVQ HKRWSEGDFQILFSKFSPAWYANGKINVGLQMTYLCYCLWAPNCLPVLYYSIVCLPVLYYSIVPSLCLLKGIPLFPGVSSPWFLPFAYLILAESMYSLVE FLSCGGTTLGWWNEQRTWLYKRTCSYLFAFVDTIFKMAGFGESGFVVTAKVADDDVAQRYGQEVMEFGSSSAMFNILGTVGMLNLMCLVGVVKRLVVGVD ENIRVFDEMGLQILLCGVLVLINWPLYQAIFFRVDKGRMPASVAVKAFAFAFLACISFVLFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	1.7	0.9689
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	2.0	0.9603
AT1G33030			O-methyltransferase family pro...		Lus10009442 [exp]	3.5	0.9453
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10019262 [exp]	3.7	0.9430
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	4.2	0.9417
AT5G39150			RmlC-like cupins superfamily p...		Lus10003116 [exp]	4.5	0.9487
AT4G27290			S-locus lectin protein kinase ...		Lus10014811 [exp]	6.5	0.9498
AT1G11340			S-locus lectin protein kinase ...		Lus10007604 [exp]	7.1	0.9312
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033735 [exp]	7.9	0.9338
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	8.4	0.9471

Compare expression of checked genes

Lus10016625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.