Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26620 443 / 8e-154 Sucrase/ferredoxin-like family protein (.1) AT5G55900 378 / 1e-128 Sucrase/ferredoxin-like family protein (.1) AT5G40510 236 / 2e-74 Sucrase/ferredoxin-like family protein (.1) AT3G27570 231 / 8e-72 Sucrase/ferredoxin-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022532 [exp] 686 / 0 AT4G26620 469 / 1e-163 Sucrase/ferredoxin-like family protein (.1) Lus10022274 [exp] 257 / 5e-82 AT5G40510 358 / 4e-123 Sucrase/ferredoxin-like family protein (.1) Lus10002520 [exp] 231 / 2e-71 AT5G40510 328 / 4e-110 Sucrase/ferredoxin-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369300 [exp] 485 / 3e-170 AT4G26620 515 / 0.0 Sucrase/ferredoxin-like family protein (.1) Potri.001G344400 [exp] 286 / 9e-93 AT5G40510 358 / 2e-122 Sucrase/ferredoxin-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06999 [flax] [poplar] Suc_Fer-like Sucrase/ferredoxin-like
Representative CDS sequence Show only first row Show all	>Lus10016627 pacid=23144015 polypeptide=Lus10016627 locus=Lus10016627.g ID=Lus10016627.BGIv1.0 annot-version=v1.0 ATGGGAAGCCATCACCGGGAAGACCCACTTTCCTACCCCACCTCCATCATCAACAACAACAACCACCACAACAACCCCTCGTCATCTTCTTCTCCGATCA CCGTCTCCGATTACCTCGACCCCGCCTCCGCCTTCCTCTCCTCCGACCCATCCTCCAACTCCCTCCTTGGAAGTGCCTCCAATAGTTTCCAGAATGATCC AGGTTTCCTCACCGACGCTAGTACCAACATCGATGCTGAATTCGGCTTCTCTCGCCCTGACTTCCGTCAGAGCCCCCTCGTCGGCACCGTACAGTTCTAC CAGCGTCATCTCTTTCTCTGTTATAAGAACCCTTCCGTCTGGCCTACCAGGATCGAGGCTGCCGAGTTTGATCGCCTTCCCAGGTTGCTCTCTGCTGCAG TCACTGCTAGGAAGGCCGACATGCTTAAAGAGACCCGTCTAACGATATGCGAAGGGCATGATGGGACAGAAACCTCTAATGGCGATGTATTGATCTTCCC TGACATGGTTAGATACAGGAGGTTAACACCTTTTTTTGTTGGCACAATTGTGGAAGAAGTGCTAGTCAAAGATGGGGAATGGTTGCCTGGAACTCCAGAG AAACTTCACGGTTCCTATGTGTTTGTATGTTCTCACTCCTCCAGAGATCGTCATTGTGGTGTTTGTGGTCCAGTCATAATTAGCAGATTTAAAGAAGAGG TAGAAGTACGTGGTCTCCAAGCTAAAGTCTCTGTCAGCGCATGCTCTCACATTGGAGGCCATAAGTATGCTGGAAATATCATCATTTTTGGATCAAGTGT TAGTGGAGGCATTAGTGGACACTGGTATGGATATGTTTCTCCTGACGATGTGCCAATACTACTGGAACAACATATTTGCAGAGGAGAGATTGTGGATTCT CTGTGGAGGGGCCAGATGGGATTGTCTGAAGAGGACCAAATTAAGTGGCAAGAACAAAGGCTCCAACTGAACGGAAAAGTTGATGTGGAGGATTGCAGCG AAGCATCAAAACCAAAAGAAACAAGCACATCATTGTCTGCGTCTAAAGTTGAAGCCAGTGGCTACTCGCAGGAAAATGGTAATTTTACTTGCAGTCAAAA TCCCAGCGTGAAAGAAACCAACGAGAAAGAAGCAATGCTGTCTGTATCGGGGGAGAAGAAGAACACCATGAAATTGCTGTCCCGTCTTAACAGTGGGAAG AAGTCGCCAATGCATAGGCTTTATGGGAAGTCTAAGTGGATTGAAAGGTGGGAGCTTGAAGATACATATGCAGCTGCTGCTGTGGTTTGTGCAGCAGTTT CAGTTGCAGTTGCATACAACTGTTACAAACAGCTAAGCTGA
AA sequence Show only first row Show all	>Lus10016627 pacid=23144015 polypeptide=Lus10016627 locus=Lus10016627.g ID=Lus10016627.BGIv1.0 annot-version=v1.0 MGSHHREDPLSYPTSIINNNNHHNNPSSSSSPITVSDYLDPASAFLSSDPSSNSLLGSASNSFQNDPGFLTDASTNIDAEFGFSRPDFRQSPLVGTVQFY QRHLFLCYKNPSVWPTRIEAAEFDRLPRLLSAAVTARKADMLKETRLTICEGHDGTETSNGDVLIFPDMVRYRRLTPFFVGTIVEEVLVKDGEWLPGTPE KLHGSYVFVCSHSSRDRHCGVCGPVIISRFKEEVEVRGLQAKVSVSACSHIGGHKYAGNIIIFGSSVSGGISGHWYGYVSPDDVPILLEQHICRGEIVDS LWRGQMGLSEEDQIKWQEQRLQLNGKVDVEDCSEASKPKETSTSLSASKVEASGYSQENGNFTCSQNPSVKETNEKEAMLSVSGEKKNTMKLLSRLNSGK KSPMHRLYGKSKWIERWELEDTYAAAAVVCAAVSVAVAYNCYKQLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26620			Sucrase/ferredoxin-like family...		Lus10016627 [exp]	0	1
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003978 [exp]	8.8	0.7688
AT5G10660			calmodulin-binding protein-rel...		Lus10026227 [exp]	10.1	0.7210
AT5G01090			Concanavalin A-like lectin fam...		Lus10027751 [exp]	11.0	0.7176
					Lus10037253 [exp]	12.4	0.7896
AT1G35510			O-fucosyltransferase family pr...		Lus10009450 [exp]	14.0	0.7271
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10008623 [exp]	24.6	0.7635
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	27.6	0.7468
AT3G61790			Protein with RING/U-box and TR...		Lus10030248 [exp]	47.0	0.7244
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	53.8	0.7330
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10000536 [exp]	59.0	0.7170

Compare expression of checked genes

Lus10016627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.