Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55840 416 / 3e-146 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G47730 382 / 6e-133 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G39180 72 / 2e-13 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 70 / 7e-13 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21520 68 / 3e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 66 / 1e-11 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 66 / 1e-11 ATSFH3 SEC14-like 3 (.1.2.3) AT4G36490 63 / 1e-10 ATSFH12 SEC14-like 12 (.1) AT1G19650 63 / 1e-10 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G16380 62 / 2e-10 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022533 [exp] 464 / 8e-167 AT1G55840 365 / 8e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10032587 [exp] 437 / 7e-155 AT1G55840 407 / 2e-143 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10043160 [exp] 413 / 6e-142 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10038752 [exp] 404 / 2e-141 AT5G47730 489 / 4e-175 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10039106 [exp] 389 / 2e-135 AT5G47730 459 / 2e-163 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10022790 [exp] 66 / 2e-11 AT3G24840 650 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028938 [exp] 64 / 4e-11 AT5G47510 422 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10023547 [exp] 64 / 7e-11 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10040432 [exp] 63 / 1e-10 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369400 [exp] 441 / 6e-156 AT1G55840 466 / 4e-166 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.006G004000 [exp] 426 / 5e-150 AT5G47730 497 / 3e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.016G005100 [exp] 410 / 8e-144 AT5G47730 501 / 7e-180 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G230500 [exp] 66 / 2e-11 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 65 / 3e-11 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G119700 [exp] 64 / 3e-11 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.009G119500 [exp] 64 / 8e-11 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G076200 [exp] 63 / 8e-11 AT5G47510 397 / 1e-136 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.007G020300 [exp] 63 / 9e-11 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.004G157700 [exp] 63 / 9e-11 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10016628 pacid=23143935 polypeptide=Lus10016628 locus=Lus10016628.g ID=Lus10016628.BGIv1.0 annot-version=v1.0 ATGGGGTTGGCCAATCAGGAAGCGATCCAGGAATTTCGTTCTCTGATGGACAGAGTGGATGAGCAGCTGAAATATACTTTCAAGGTTCCTCCTAGTGGTC TTAACTTTGGTAAAGTTGTTTGTCCAGTGAGAGAGATGAACTCAGTTCAGTCACCACTAGCTATTACAATTTACTGGTTTTGTCTGTTCCAAAATGTACA CCAGGGATTTCCGACGGAAACGTTGACAAGATTTCTCAACGCAAGGGACTGGAATGTTGCTAAGGCTCATAAAATGAAACCAATCGTTCCAACTGAGTTG TATAGATCAATTCGGGATACTCAGCTTGTTGGATTGTCAGGTTACTCTAAAGAGGGTCTTCCTGTTTTTGCTTGCGGTGTGGGGCAAAGCACGTATGACA AAGCTTCTGTTCATTACTATGTCCAGTCACACATCCAAATGAACGAATACCGGGACCGTGTAGTATTGCCTAATGCGACGAAGAAATATGGAAGGCATGT AGGCACATGTATTAAGATCTTGGATATGACTGGCCTAAAATTGTCAGCATTAAATCAAATTAAGTTGTTAACTGCAATTTCTTCAACGGATGACTTAAAT TATCCAGAGAAGACGGAGACATATTACATTGTCAATGTCCCATACATTTTTTCAGCCTGTTGGAAGGTTGTGAAGCCTTTGTTACAGGAGAGGACAAGGA AGAAAATCCAGATAATGGATTATTCATCGCTGCCTCATTTCTGTATAAAAGAAGGCTCTGGTTCATCTCGTGTTGCAGCAAGTGGAACCACCGTTAACTG CTTCTCGTTAGATCATCCCTTGCATCAGCAGTTATACGACTTCATTAAACAACAAGCTGACTTGGAGGAATCTGCTTCACCTCTGAAGCAAGGTTCCGTC CATGTAGATTTCCCAGAGCCTGACCATAACGGTACTAAGATCATGAAGACGATAGAGTCCGAGATCCACAAGCTTGGCGATATGAATGGCCTCAACAATT CATTCAGCAGTGTCCGAGTGAGTGGCACGTGA
AA sequence Show only first row Show all	>Lus10016628 pacid=23143935 polypeptide=Lus10016628 locus=Lus10016628.g ID=Lus10016628.BGIv1.0 annot-version=v1.0 MGLANQEAIQEFRSLMDRVDEQLKYTFKVPPSGLNFGKVVCPVREMNSVQSPLAITIYWFCLFQNVHQGFPTETLTRFLNARDWNVAKAHKMKPIVPTEL YRSIRDTQLVGLSGYSKEGLPVFACGVGQSTYDKASVHYYVQSHIQMNEYRDRVVLPNATKKYGRHVGTCIKILDMTGLKLSALNQIKLLTAISSTDDLN YPEKTETYYIVNVPYIFSACWKVVKPLLQERTRKKIQIMDYSSLPHFCIKEGSGSSRVAASGTTVNCFSLDHPLHQQLYDFIKQQADLEESASPLKQGSV HVDFPEPDHNGTKIMKTIESEIHKLGDMNGLNNSFSSVRVSGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10016628 [exp]	0	1
AT4G32790			Exostosin family protein (.1)		Lus10011120 [exp]	7.5	0.7017
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10013219 [exp]	22.7	0.7593
AT1G13030			sphere organelles protein-rela...		Lus10006465 [exp]	24.0	0.7392
AT2G28230			TATA-binding related factor (T...		Lus10030654 [exp]	28.4	0.7566
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Lus10017757 [exp]	32.3	0.7548
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Lus10009289 [exp]	40.2	0.7334
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10006797 [exp]	44.5	0.6972
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10001559 [exp]	44.9	0.7116
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	48.6	0.7259
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	55.0	0.7244

Compare expression of checked genes

Lus10016628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.