Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47750 758 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 691 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 682 / 0 D6PK D6 protein kinase (.1) AT2G44830 610 / 0 Protein kinase superfamily protein (.1) AT3G27580 572 / 0 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G40030 559 / 0 Protein kinase superfamily protein (.1) AT1G79250 541 / 0 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 536 / 0 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 531 / 0 RSH3 root hair specific 3 (.1) AT3G52890 530 / 1e-178 KIPK KCBP-interacting protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022534 [exp] 974 / 0 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 715 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 711 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 635 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10042911 [exp] 619 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 563 / 0 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 561 / 0 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10035591 [exp] 550 / 0 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10008634 [exp] 549 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G004900 [exp] 782 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 775 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 660 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.014G047500 [exp] 649 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 637 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 582 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 564 / 0 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 561 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.004G186300 [exp] 558 / 0 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 551 / 0 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016629 pacid=23144007 polypeptide=Lus10016629 locus=Lus10016629.g ID=Lus10016629.BGIv1.0 annot-version=v1.0 ATGGCCTCAAAACCTGGCACCAGAAGTTCTCCAGAGAAGCCAAGGAAACCGGCTATTCAAACGCCAGAAGCTAATCTCCGGAATCAGCCTTCTTCTCCGC AGATTACAAAGACAGGCCAACCGGAGCCTGCTGCCCCCATTAAACCATCTCAAACTGCACACAGTCTTGCATCAAAGGTGGCAACAACAGCAACTGGAGC CAGTAAGTCAGAGAGTCCTCCTCGGCTATTGGATGGTGCTGATTCTTTAGCTAATAAAGTAACCTCTGGGTTGTCCTTTGCCGACTCAAACCAAATTCCA ATTTGTGCGGATCTGGAGCCGAATGACAGTATGGTTTCTCAAGTGAGTGAAGAGAAGCCAGCTGAGAATATTGACATTAGCCTTACTTCTGCCAGTGATG GGACTAGTAGCATGGCAAAAACTAGTGGAAGTGCCAAAATTAGTGGACGGACCGATTTTGTTGAGAGTGGGAAGAATAGTATTTATAGAGGAAGCACGGG CAGTGATTTGAGTGATGAAAGTAGTTGTAGCAGCTTAAGCAGTGGTGTCAACAAGCCTCATAAAGCGAATGATGTGAGGTGGGAAGCCATACAAGCTGTA CGCTCCAGAGATGGTGGTTTAGGGGTGAGCCATTTCAGATTGCTCAAGAGGTTGGGCTGTGGAGACATTGGGAGTGTGTATCTGTCAGAGTTGAGTGGAA CAAAGTGTTATTTCGCGATGAAAGTTATGGACAAAGCATCGTTGACAAGCCGCAAGAAGCTTCTTCGAGCTCAAACCGAGAGAGAAATTCTCCAGTGTTT GGACCATCCTTTCCTTCCAACTCTGTATTCCCACTTCGAGACTGACAAGTTCTCCTGTCTGGTTATGGAGTATTGCCCTGGAGGCGACTTGCATACTCTC CGGCAGAGACAACCAGGGAAGCATTTTTCTGAACGAGCAGTCAAATTCTATATCGCAGAGGTTCTACTTGCAATGGAATATCTCCACATGCTGGGAATAG TGTATCGTGATCTCAAACCAGAAAATGTTCTTGTCCGTGAAGATGGTCATGTAATGCTCTCAGACTTCGACCTCTCCTTACGCTGTGATGTCAACCCAAC TCTAGTAAAGTCATCAGTGCCTGAGGGTGAGCTGTTGCGAAAGAATCCAGCTTTCTGCGTTCAACCTGCCTGCATCAAGCCGTCTTGCATTCAGCCATCC TGTGTGGTACCTACCACATGCTTTTCGCCTCGAACATTTTTTGGAAAATCAAAGAAAGAGAAGAAATCCCCCAAGACAGAGATGGGGAATCAAGTCAGCC CTCTGCCAGAGCTTATAGCAGAGCCAAGTGATGCACGTTCCATGTCATTCGTGGGAACCCATGAGTATTTGGCACCAGAGATCATCAAGGGTGAAGGTCA TGGTAGTGCTGTGGATTGGTGGACTTTGGGGATCTTTATCTACGAGCTATTATTTGGTAAAACACCTTTCAAAGGGTCTGGAAACAGAGCCACGTTGTTC AACGTAGTTGGCCAGCCATTGAGATTTCCTGAGGCACCTGTTGTGAGCTTCTCTGCCAGAGACTTAATAAGGGGATTGCTAGTGAAAGAACCACAAAACA GATTGGCATACAAAAGAGGAGCTACTGAGATCAAGCAGCATCCTTTCTTCGAAGGCATAAACTGGGCGTTGATTCGTTGTGCAAGCCCACCTGAGATCCC TAAACCGGTTGAGATTAAGCAGATCCCGGTCCCCACATCTTCAACAAGTGTGTCTGCTCCTGCTATTGCTGTCAATGCAGATCAGAACAAATATCTGGAA TTCGATTTCTTTTAA
AA sequence Show only first row Show all	>Lus10016629 pacid=23144007 polypeptide=Lus10016629 locus=Lus10016629.g ID=Lus10016629.BGIv1.0 annot-version=v1.0 MASKPGTRSSPEKPRKPAIQTPEANLRNQPSSPQITKTGQPEPAAPIKPSQTAHSLASKVATTATGASKSESPPRLLDGADSLANKVTSGLSFADSNQIP ICADLEPNDSMVSQVSEEKPAENIDISLTSASDGTSSMAKTSGSAKISGRTDFVESGKNSIYRGSTGSDLSDESSCSSLSSGVNKPHKANDVRWEAIQAV RSRDGGLGVSHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKASLTSRKKLLRAQTEREILQCLDHPFLPTLYSHFETDKFSCLVMEYCPGGDLHTL RQRQPGKHFSERAVKFYIAEVLLAMEYLHMLGIVYRDLKPENVLVREDGHVMLSDFDLSLRCDVNPTLVKSSVPEGELLRKNPAFCVQPACIKPSCIQPS CVVPTTCFSPRTFFGKSKKEKKSPKTEMGNQVSPLPELIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTLGIFIYELLFGKTPFKGSGNRATLF NVVGQPLRFPEAPVVSFSARDLIRGLLVKEPQNRLAYKRGATEIKQHPFFEGINWALIRCASPPEIPKPVEIKQIPVPTSSTSVSAPAIAVNADQNKYLE FDFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10016629 [exp]	0	1
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10022534 [exp]	3.2	0.7786
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031882 [exp]	6.8	0.7751
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	11.0	0.7528
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10008266 [exp]	14.4	0.7451
					Lus10017791 [exp]	14.7	0.7565
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034753 [exp]	16.1	0.7503
AT3G26935			DHHC-type zinc finger family p...		Lus10035177 [exp]	19.7	0.7457
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10003931 [exp]	19.7	0.7213
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	21.0	0.7456
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10033234 [exp]	21.5	0.7350

Compare expression of checked genes

Lus10016629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.