Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19010 531 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 361 / 4e-120 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT5G63380 354 / 3e-117 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 352 / 1e-116 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 343 / 4e-113 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 339 / 2e-111 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 334 / 1e-109 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 281 / 6e-89 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 270 / 8e-85 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT3G21230 265 / 1e-82 4CL5 4-coumarate:CoA ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015998 [exp] 363 / 2e-120 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 360 / 4e-117 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 337 / 1e-110 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 336 / 2e-110 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 330 / 4e-108 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 331 / 5e-108 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10022542 [exp] 317 / 8e-107 AT4G19010 190 / 6e-57 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 320 / 3e-104 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10002791 [exp] 314 / 1e-101 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G099700 [exp] 560 / 0 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 372 / 2e-124 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 365 / 1e-121 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 347 / 2e-114 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 346 / 4e-114 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.017G112800 [exp] 335 / 5e-110 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 333 / 3e-109 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 324 / 1e-105 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094900 [exp] 321 / 2e-104 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 321 / 2e-104 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10016630 pacid=23143996 polypeptide=Lus10016630 locus=Lus10016630.g ID=Lus10016630.BGIv1.0 annot-version=v1.0 ATGAACCCTCTTGCTACCGTCCCGGAAATCCAGAGCCGCATTGCCGATTGCGGCGCCTCTTTGGCTTTCGCTTCTCTGGGTAGAGATTCTGATTTCGGGA TCCCATTCATTGCCGTCCCAGAATTGAGCTCCTCTACTTGTACTGATGGTTCTGGTTATGATTTCTCCACATTTGGCGATTTCCACCGCATGATTACTTG CGATGCTGCCGATTTGGGGTTTCGTCCGCCGATACAGCAGCAGGACACGGCGGCGATAATTTATTCTTCTGGAACTACTGGAGCCAGTAAGGGCGCTGTA ATAACCCACGGGAATTTGATTGCTGCCGCGGAACTATTTGTGAGGTTCGAGGCTTCCATGTATGATTCCCCAGCTTGGGAGAATGTCTATTTGGCAGTGT TGCCCATGTTCCACATATACGGACTCGTCCTGTTCGTAACGGGCCTGCTGTCGCTGGGATCCACCATTGTTGTGATGAAGAAATTTGATGCTGATGAAGT TATTAACGCGATTGAGAAGCACAAGGTCACCCATTTCCCTGTTGTCCCTCCGATACTGGGTCCCCTTGCAGAACGAGCCAAAGGTGTTTGTGAAAATTTC TTAAAGAGCTTGAAGCAGGTTTCCTGTGGTGCAGCTCCTTTAAGTGCTGGCACAATCCAGACGTTCCTTCAAACATTACCTAATGTTGATTTCATTCAGG GATATGGAATGACAGAGTCAACGGCGGTCGGAACTAGAGGGTTCAATACGCAGAGATTTCACAAGTACTCTTCAGTTGGACTGTTGGCCCCAAACACAGA AGCAAAAGTAGTTGATTGTGTAAGTGGTCACGCTCTTCCTCCAGGGAGTGTTGGGGAGCTCTGGATGAGGGGACCAGGCACCATGAAAGGGTACTTGAAC AATCCAGAGATAAGTGTTGAGACAGTTGACAAAGAAGGTTGGCTTCATACAGGAGACATTGTTTGCTTTGACGATGATGGTTACTTGTACATCTTTGATC GGTTGAAAGAGATGATCAAGTACAAGGGTTTCCAGATAGCACCTGCTGATTTGGAAGCTGTATTAATAACCCATCCAGACATAATGGAAGCGGCTGTGGC AGGCATTGCTGCGGGCAAAGACGATGGAGAAATACCAGTTGCATTCGTGGTAAGGAGGCAGGGAAGCAGTCTCACAGAAGAGGGTGTCATTGAATATGTA GCTACCCAGGTTGCGCCCTATAAAAAGGTGAGAAGAGTGATATTCACAGAATCAATACCAAGGTCTCCTGCTGGGAAGATCCTTAGACGCCAATTGAAGA AGATGATGTTGATGCCCAGTCCCAGGCTCTAA
AA sequence Show only first row Show all	>Lus10016630 pacid=23143996 polypeptide=Lus10016630 locus=Lus10016630.g ID=Lus10016630.BGIv1.0 annot-version=v1.0 MNPLATVPEIQSRIADCGASLAFASLGRDSDFGIPFIAVPELSSSTCTDGSGYDFSTFGDFHRMITCDAADLGFRPPIQQQDTAAIIYSSGTTGASKGAV ITHGNLIAAAELFVRFEASMYDSPAWENVYLAVLPMFHIYGLVLFVTGLLSLGSTIVVMKKFDADEVINAIEKHKVTHFPVVPPILGPLAERAKGVCENF LKSLKQVSCGAAPLSAGTIQTFLQTLPNVDFIQGYGMTESTAVGTRGFNTQRFHKYSSVGLLAPNTEAKVVDCVSGHALPPGSVGELWMRGPGTMKGYLN NPEISVETVDKEGWLHTGDIVCFDDDGYLYIFDRLKEMIKYKGFQIAPADLEAVLITHPDIMEAAVAGIAAGKDDGEIPVAFVVRRQGSSLTEEGVIEYV ATQVAPYKKVRRVIFTESIPRSPAGKILRRQLKKMMLMPSPRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19010			AMP-dependent synthetase and l...		Lus10016630 [exp]	0	1
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10012225 [exp]	4.2	0.8823
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10020504 [exp]	5.0	0.8689
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10028879 [exp]	6.9	0.8768
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	7.2	0.8716
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10001618 [exp]	9.6	0.8737
AT3G30300			O-fucosyltransferase family pr...		Lus10034356 [exp]	10.0	0.8556
AT3G53320			unknown protein		Lus10026478 [exp]	16.6	0.8124
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10037574 [exp]	17.0	0.8469
AT4G39860			unknown protein		Lus10041695 [exp]	18.4	0.8350
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10002854 [exp]	21.6	0.8575

Compare expression of checked genes

Lus10016630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.