Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 663 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 650 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G10770 504 / 9e-171 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT1G09930 483 / 8e-163 ATOPT2 oligopeptide transporter 2 (.1) AT5G53520 474 / 1e-159 ATOPT8 oligopeptide transporter 8 (.1) AT4G27730 465 / 4e-156 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53510 458 / 4e-153 ATOPT9 oligopeptide transporter 9 (.1) AT5G64410 451 / 9e-151 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT4G16370 447 / 5e-149 ATOPT3 oligopeptide transporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022543 [exp] 996 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 791 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 736 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 734 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 717 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 714 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 687 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 670 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 663 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370100 [exp] 701 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G369700 [exp] 701 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 616 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 549 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.003G145500 [exp] 522 / 7e-178 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 517 / 3e-176 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 500 / 1e-169 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 490 / 6e-166 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.002G109300 [exp] 465 / 1e-155 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.009G079500 [exp] 459 / 1e-153 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10016631 pacid=23143964 polypeptide=Lus10016631 locus=Lus10016631.g ID=Lus10016631.BGIv1.0 annot-version=v1.0 ATGGGGTCAATCAAACACCCTTTTCTTCTCCACTTCTCTCTTGGACAAGTGGGCTTCACTGCCCCCGTGACCTCTATATTGTCTTGTTTTCTCCATCCAT CCATCCATCCATCCATAATTGACGTGATTTTGGGGAAGTGTGATGTTACTTACTTAAACAAATCTCCAACCCAGCTGAGCTGCTTCATTGTCTCCACAGG AGAGGAAGAACAATTACAAGGCAACCAACCAGACATGGGAAGCTTAGCTGAAAATGGGGCGCCTCCAATTCCAGACTCCACCATTCCTCCTGAGAGCTCC TCCACTTTTGAAATTGGAAAACCAGGGGAATTCGGGGAAGAAGAAGTGAACGACAGCCCAATTGAGCAAGTGAGGCTGACGGTTCCAATAACCGACGACC CAACACAGCCAACCATAACCATAAGGACGTGGGTCTTGGGGATACTGTCATGTTCGCTTTTGGCTTTCGTGAATCAGTTCTTCGGCTACCGGTCCAACCA GCTGTACGTGAGCTCTGTCGCAGCTCAAATTGTGGTTCTCCCGCTGGGGAAATTCATGGCTGCTGCTATTCCGAGTATAGTGATTCGGGTGCCGTTGACC AAGTGGTCGTTTTCGTTGAATCCAGGGCCGTTCAATCTGAAAGAACATGTTCTGATTACCATATTTGCAAACTGTGGAGCCGGCGGAGTTTATGCAGTGG CCATTATCACAGCAGTCAGGGCATTTTATCACAGGGATATCCATCCGGCCGCGGCTATGTTGCTGGTTCAAACCACCCAGTTGCTTGGGTATGGATGGGC TGGGATGTTCAGAAAGTATCTGGTGGATTCACCATATATGTGGTGGCCATCCAATCTGGTCCAAGTCTCTCTTTTCAGGGCACTCCACGAGAAGGAAAAG AGAGCAAGAGGAGGAAAAAGCAGGCTGCAATTCTTCACAATAGTATTCATCTCCAGCTTTGCATACTACGTCGTCCCAAGCTACTTGTTCCCATCGCTCT CAACGCTTTCATTCATTTGTTGGATATGGAAGGACTCCATTACAGCACAGCAGATTGGTTCAGGACTAAGAGGACTCGGCGTGGGCTCATTTGGCCTTGA CTGGTCAACAGTTGCTGGCTTCTTAGGGAGTCCTCTGGCCACACCTCTCTTTGCAATCATCAACACTCTAGCTGGGTTTTTCTTGGTTGTTTATGTCATC ATCCCCATTGCTTATTGGAACAACGCTTTTGAAGCTAAGAGGTTCCCAATCTTCTCCCAACACACGTTCGACAGTGGTGGTCAGATCTACAACATCACCC GGGTGTTGAACGACAAGAGCTTTGGGATTGATCATACTGCTTATGAGAACTACAGCAGGCTGTATCTCAGCGTTACCTTTGCGTTTGTTTATGGGATGAG CTTTGCTGCTCTTATGGCTACCATTTCCCACGTTGCTCTCTTCGATGGCAAAACAATTTGGGAAATGTGGAAGAAGACAACTGGTGCCATGAAAGAGCAG TACACAGATGTCCACACAAGGCTGATGAAGAAGAACTATGAAGCTGTTCCACAATGGTGGTTCATGACCATCTTGGTTATATCTCTGGCCCTTGCATTTC TTGCTGTCGAAGGTTTTAACAAGCAGCTTCAACTTCCTTGGTGGGGACTCCTCTTAGCTTGTGGAATTGCCTTGTTCTTCACTTTGCCAATTGGTATCAT TCAAGCTACAACCAATCAGGTGAAAAAAAAACCTTCAAAAAATTCAAATCTTTCATACATTCAAGCTCATTCCTACCCCTAA
AA sequence Show only first row Show all	>Lus10016631 pacid=23143964 polypeptide=Lus10016631 locus=Lus10016631.g ID=Lus10016631.BGIv1.0 annot-version=v1.0 MGSIKHPFLLHFSLGQVGFTAPVTSILSCFLHPSIHPSIIDVILGKCDVTYLNKSPTQLSCFIVSTGEEEQLQGNQPDMGSLAENGAPPIPDSTIPPESS STFEIGKPGEFGEEEVNDSPIEQVRLTVPITDDPTQPTITIRTWVLGILSCSLLAFVNQFFGYRSNQLYVSSVAAQIVVLPLGKFMAAAIPSIVIRVPLT KWSFSLNPGPFNLKEHVLITIFANCGAGGVYAVAIITAVRAFYHRDIHPAAAMLLVQTTQLLGYGWAGMFRKYLVDSPYMWWPSNLVQVSLFRALHEKEK RARGGKSRLQFFTIVFISSFAYYVVPSYLFPSLSTLSFICWIWKDSITAQQIGSGLRGLGVGSFGLDWSTVAGFLGSPLATPLFAIINTLAGFFLVVYVI IPIAYWNNAFEAKRFPIFSQHTFDSGGQIYNITRVLNDKSFGIDHTAYENYSRLYLSVTFAFVYGMSFAALMATISHVALFDGKTIWEMWKKTTGAMKEQ YTDVHTRLMKKNYEAVPQWWFMTILVISLALAFLAVEGFNKQLQLPWWGLLLACGIALFFTLPIGIIQATTNQVKKKPSKNSNLSYIQAHSYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016631 [exp]	0	1
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016632 [exp]	1.0	0.9380
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010022 [exp]	6.6	0.8027
AT2G44130			Galactose oxidase/kelch repeat...		Lus10016214 [exp]	13.6	0.7857
					Lus10027950 [exp]	35.7	0.7879
AT4G15020			hAT transposon superfamily (.1...		Lus10000517 [exp]	41.5	0.6946
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036822 [exp]	55.3	0.6820
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010023 [exp]	96.1	0.6989
AT1G49475	B3		AP2/B3-like transcriptional fa...		Lus10007192 [exp]	108.9	0.6864
AT2G30600			BTB/POZ domain-containing prot...		Lus10016014 [exp]	135.7	0.6938
					Lus10019815 [exp]	158.3	0.6933

Compare expression of checked genes

Lus10016631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.