Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 981 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 970 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G10770 754 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT1G09930 744 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT4G27730 721 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G64410 714 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT5G53520 713 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 691 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT4G16370 684 / 0 ATOPT3 oligopeptide transporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022543 [exp] 1339 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 1097 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 1084 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 1082 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 1076 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 1036 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 1011 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 983 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10042147 [exp] 963 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 1063 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 1050 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 951 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 838 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.003G145500 [exp] 774 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 767 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 738 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 738 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.002G109300 [exp] 736 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.009G079500 [exp] 733 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10016632 pacid=23143958 polypeptide=Lus10016632 locus=Lus10016632.g ID=Lus10016632.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTATTCCGAGTATAGTGATTCGGGTGCCGTTGACCAAGTGGTCGTTTTCGTTGAATCCAGGGCCGTTCAATCTGAAAGAACATGTTCTGA TTACCATATTTGCAAACTGTGGAGCCGGCGGAGTTTATGCAGTGGCCATTATCACAGCAGTCAGGGCATTTTATCACAGGGATATCCATCCGGCCGCGGC TATGTTGCTGGTTCAAACCACCCAGTTGCTTGGGTATGGATGGGCTGGGATGTTCAGAAAGTATCTGGTGGATTCACCTTATATGTGGTGGCCTTCCAAT CTGGTCCAAGTCTCTCTTTTCAGGGCGCTCCACGAGAAGGAAAAGAGAGCAAGAGGAGGAAAAAGCAGGCTGCAATTCTTCACAATAGTATTCATCTCCA GCTTTGCATACTACGTCGTCCCAAGCTACTTGTTCCCATCGCTCTCAACGCTTTCATTCATTTGTTGGATATGGAAGGACTCCATTACAGCACAGCAGAT TGGTTCAGGACTAAGAGGACTCGGCGTGGGCTCATTTGGCCTTGACTGGTCAACAGTTGCTGGCTTCTTAGGGAGTCCTCTGGCCACACCTCTCTTTGCA ATCATCAACACTCTAGCTGGGTTTTTCTTGGTTGTTTATGTCATCATCCCCATTGCTTATTGGAACAACGCTTTTGAAGCTAAGAGGTTCCCAATCTTCT CCCAACACACGTTCGACAGTGGTGGCCAAATTTACAACATCACCCGGGTGTTGAACGACAAGAGCTTTGGGATTGATCATACCGCTTATGAGAACTACAG CAGGCTGTATCTCAGCGTTACCTTTGCGTTTGTTTATGGGATGAGCTTTGCTGCTCTTATGGCTACCATTTCCCACGTTGCTCTCTTCGATGGCAAAACA ATTTGGGAGATGTGGAAGAAGACAACTGGTGCCATGAAAGAGCAGTACACAGATGTCCACACAAGGTTGATGAAGAAGAACTATGAAGCTGTTCCTCAAT GGTGGTTCATGACCATCTTGGTTATATCTCTGGCCCTTGCATTTCTTGCTGTCGAAGGTTTTAACAAGCAGCTGCAACTTCCTTGGTGGGGACTCCTCTT AGCTTGTGGAATTGCCTTGTTCTTCACTTTGCCTATTGGTATCATTCAAGCTACAACCAATCAGCAAATGGGGTTGAATGTCATCACAGAGCTTATCATA GGATACATGTACCCCGGTCGGCCTCTGGCCAATGTAGCTTTCAAAACTTATGGGTACATTAGCATGGCACAAGCTCTAGGCTTTTTACAAGACTTCAAAT TGGGCCATTACATGAAAATCCCTCCCAAAGTCATGTTCCTAGTCCAGACAGTGGGAACAATAGTGGCTTCAACTGTCTACTTTGCAACATCATGGTGGCT CCTCTCAGATATCAAAGACATCTGTAACCCAGATAAATTACCCAAGGGAAGTCCATGGACATGCCCCGGAGATGATGTTTTCTACAGTGCTTCAATTATA TGGGGAGTCATAGGACCTCTGAGAATGTTCACAGACAGTGGGAATTACCCTCAAATGAACTGGTTTTTCCTTGTTGGTCTACTGGCTCCGGTCCCCGTAT GGCTCCTGTGGCGAAAATACCCGGAGCAGAAATGGATAAGGCTGATCCATATGCCATTGATATTTGCAGCAACAGCAAATATGCCACCAGCTAAGCCAGT TCATTACCTGTCATGGGGAACAGTTGGGATATTGTTCAACTTTTATATCTACAGAAAGTACAAGGGATGGTGGGCTAGGCATACTTACATATTGTCAGCT GCAATGGATGCTGGTGTTGCTTTCTTGGGGATACTCATCTATTTCACTCTTCAGAGTAAGGATATTTATGGAGCAGAGTGGTGGGGATTGGAAGCTGATG ATCATTGCCCCTTGGCAAGCTGTCCTACTGCTCCTGGCATTCAAGTTGATGGTTGCCCTCTCATTCAATGA
AA sequence Show only first row Show all	>Lus10016632 pacid=23143958 polypeptide=Lus10016632 locus=Lus10016632.g ID=Lus10016632.BGIv1.0 annot-version=v1.0 MAAAIPSIVIRVPLTKWSFSLNPGPFNLKEHVLITIFANCGAGGVYAVAIITAVRAFYHRDIHPAAAMLLVQTTQLLGYGWAGMFRKYLVDSPYMWWPSN LVQVSLFRALHEKEKRARGGKSRLQFFTIVFISSFAYYVVPSYLFPSLSTLSFICWIWKDSITAQQIGSGLRGLGVGSFGLDWSTVAGFLGSPLATPLFA IINTLAGFFLVVYVIIPIAYWNNAFEAKRFPIFSQHTFDSGGQIYNITRVLNDKSFGIDHTAYENYSRLYLSVTFAFVYGMSFAALMATISHVALFDGKT IWEMWKKTTGAMKEQYTDVHTRLMKKNYEAVPQWWFMTILVISLALAFLAVEGFNKQLQLPWWGLLLACGIALFFTLPIGIIQATTNQQMGLNVITELII GYMYPGRPLANVAFKTYGYISMAQALGFLQDFKLGHYMKIPPKVMFLVQTVGTIVASTVYFATSWWLLSDIKDICNPDKLPKGSPWTCPGDDVFYSASII WGVIGPLRMFTDSGNYPQMNWFFLVGLLAPVPVWLLWRKYPEQKWIRLIHMPLIFAATANMPPAKPVHYLSWGTVGILFNFYIYRKYKGWWARHTYILSA AMDAGVAFLGILIYFTLQSKDIYGAEWWGLEADDHCPLASCPTAPGIQVDGCPLIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016632 [exp]	0	1
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016631 [exp]	1.0	0.9380
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010022 [exp]	2.0	0.8862
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10019002 [exp]	9.8	0.8818
AT3G56570			SET domain-containing protein ...		Lus10013825 [exp]	20.4	0.8141
					Lus10027950 [exp]	23.2	0.8256
AT2G44130			Galactose oxidase/kelch repeat...		Lus10016214 [exp]	26.2	0.7973
AT2G23790			Protein of unknown function (D...		Lus10000580 [exp]	26.6	0.8711
AT4G09730		RH39	RH39 (.1)		Lus10018946 [exp]	39.3	0.8467
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10037465 [exp]	40.8	0.8293
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10011141 [exp]	53.1	0.8038

Compare expression of checked genes

Lus10016632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.