Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 1007 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 998 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G10770 758 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT5G53520 736 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT1G09930 736 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT4G27730 724 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G64410 713 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT5G53510 709 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT4G16370 698 / 0 ATOPT3 oligopeptide transporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022544 [exp] 1415 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 1227 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 1143 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 1058 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10042147 [exp] 1031 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 1018 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 1003 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 974 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 958 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 1071 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 1053 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 976 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 875 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.003G145500 [exp] 773 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 769 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019500 [exp] 744 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019700 [exp] 743 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.009G079500 [exp] 734 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 726 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10016633 pacid=23143993 polypeptide=Lus10016633 locus=Lus10016633.g ID=Lus10016633.BGIv1.0 annot-version=v1.0 ATGGGGATGGCAGATGAGAATATCAAAGGGTATGATGATGATGATGACCAGCATCTTCCCAAGTCCACCACTGGACATTTCCAGATTGAAAAAACAGCAG AGGAAGAAGAGGAGAACGACAACCCAATTGAGCAAGTCAGGCTGACGGTTCCGATCACAGACGACCCGACCCAACCAACGTTGACATTCAGGACATGGGT TCTGGGGATAACCTCGTGTGCACTTCTGGCGTTTGTGAACCAGTTCTTCGGGTACCGCACCAACCAGTTGTCGGTCAGCTCGGTCACTGCTCAGATTTTG GTGCTGCCAATTGGAAAGCTGATGGCTGCTACTCTTCCTAAGCAGGCGATTCGTGTCCCACTAACAAAGTGGTCCTTCTCGTTGAATCCGGGGCCGTTTA ACTTGAAAGAGCATGTTCTGATCACCATATTCGCCAACTGCGGATCTGGAGGTGTTTATGCTGTTCATATCATTACTTCAGTGAAAGCTCTGTACCATGC CACCATTAGCCCTATCCCTGCCATGTTGCTCGTACAGACCACTCAGTTGCTTGGGTATGGATGGGCAGGTATCTTCAGGAAATTTCTAGTGGATTCGCCT TACATGTGGTGGCCTGCAAATTTGGTTCAAGTTTCTCTCTTCAGGGCTTTGCATGAGAAGGACAAGAGAACAAACGGAGGACAAACAAGGCTACAATTTT TCACACTGGTTTTCGTATGCAGCTTTGCTTACTACATCGTTCCAGGCTACCTCTTTCCATCGCTGTCAACCATTTCAATTCTGTGCTTGATCTGGAAGAA CTCTGTCAAAGCGCAGCAGATTGGCTCAGGATTTAGTGGCCTTGGAATTGGTTCATTTGGCCTGGATTGGTCTACTGTTGCATCCTTCCTGGGAACTCCT TTAGCCTCACCGTTATTTGCCATTTTAAACACCTTGACTGGTTTCTTCTTCATTATCTACATTGTTGTCCCAATTGCTTACTGGAATAATGCCTACGATG CCAAGAAATTCCCCATCTTTTCCCAGAAGACTTTTGACAGTACAGGAGCACACTACGACGTCGACAGGATTCTGAACAAGAAAACATTTGAGATTGATTA CCCTGCCTATAATGGCTACAGCAAACTCTATCTCAGTGTCACCTTTGCCTTTGTTTATGGCATGACTTTTGCTGCTCTCATGGCTACCATTGTACATGTT GCCTTGTTTGATGGCAAAACAATATGGAAGCTTTGGAAGAAGACTACAGGTGCAGTGAAGGATCGGTACTCTGATGTGCATACAAGGCTGATGAAGAAGA ACTATGAAGCAGTACCTGAATGGTGGTTCTTGATAATCCTGGCTATTTCTTTTGCTCTTGCTCTTCTTGCAGTTGAAGGTTTCGGCAAACAGCTTCAGCT TCCATGGTGGGGGCTTATCTTGGCTTGTCTTATTGCCCTTACCTTCACATTACCAATTGGGATCATTCAAGCCACCACAAATCAGCAAATAGGGCTAAAT GTGATCACAGAGTTGATAATCGGATACATGTACCCTGGGAAACCCTTGGCAAACGTGGCTTTCAAGACTTACGGATACATCAGCATGGCACAAGCACTAG GATTCCTGGGTGACTTCAAACTAGGCCATTACATGAAAATCCCTCCTAAAGTAATGTTTCTGGTCCAGACAGTGGGAACACTAGTGTCGTCGACAGTCTA CTTTGCGACATCCTGGTGGCTGCTGTCAACAGTGAAAAACATATGTGATCCAGACGCACTCCCCCCTGGGAGTCCATGGACTTGCCCAGGAGACAGTGTG TTCTACAGTGCCTCAATCATATGGGGAGTAATTGGACCTCTAAGAATGTTCACCAAAAAGGGAATCTACCCAGAGATGAACTGGTTCTTCCTCATAGGAG CACTGGCACCCGTTCCTGTTTGGTTGCTTGCTAGGAAATACCCGCAGAAGAAATGGATAAAGATGATCCATATGCCCCTCATATTTGCGGCTACTAACAG TATGCCGCCGGCTAGACCAGTTCACTTCTGGACATGGGGAGCAGTGGGGATTTTCTTCAACTACTACGTCTACAACAGGTACAAAGGATGGTGGGCTAGA CACACTTACATTATGTCGGCTGCTTTGGATGCTGGGGTTGCCTTCCTTGCTGTTTTGCTCTTCTTTCTTCTGCAGAACAAGAACATCAATGGTCCTGCTT GGTGGGGATTGGAACAAAGTGATCATTGTTTGTTATCGAGTTGTCCTACTGCCCCTGGAGTTGTTGTCCATGGTTGCCCTGTCGTTTCTTGA
AA sequence Show only first row Show all	>Lus10016633 pacid=23143993 polypeptide=Lus10016633 locus=Lus10016633.g ID=Lus10016633.BGIv1.0 annot-version=v1.0 MGMADENIKGYDDDDDQHLPKSTTGHFQIEKTAEEEEENDNPIEQVRLTVPITDDPTQPTLTFRTWVLGITSCALLAFVNQFFGYRTNQLSVSSVTAQIL VLPIGKLMAATLPKQAIRVPLTKWSFSLNPGPFNLKEHVLITIFANCGSGGVYAVHIITSVKALYHATISPIPAMLLVQTTQLLGYGWAGIFRKFLVDSP YMWWPANLVQVSLFRALHEKDKRTNGGQTRLQFFTLVFVCSFAYYIVPGYLFPSLSTISILCLIWKNSVKAQQIGSGFSGLGIGSFGLDWSTVASFLGTP LASPLFAILNTLTGFFFIIYIVVPIAYWNNAYDAKKFPIFSQKTFDSTGAHYDVDRILNKKTFEIDYPAYNGYSKLYLSVTFAFVYGMTFAALMATIVHV ALFDGKTIWKLWKKTTGAVKDRYSDVHTRLMKKNYEAVPEWWFLIILAISFALALLAVEGFGKQLQLPWWGLILACLIALTFTLPIGIIQATTNQQIGLN VITELIIGYMYPGKPLANVAFKTYGYISMAQALGFLGDFKLGHYMKIPPKVMFLVQTVGTLVSSTVYFATSWWLLSTVKNICDPDALPPGSPWTCPGDSV FYSASIIWGVIGPLRMFTKKGIYPEMNWFFLIGALAPVPVWLLARKYPQKKWIKMIHMPLIFAATNSMPPARPVHFWTWGAVGIFFNYYVYNRYKGWWAR HTYIMSAALDAGVAFLAVLLFFLLQNKNINGPAWWGLEQSDHCLLSSCPTAPGVVVHGCPVVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016633 [exp]	0	1
					Lus10043485 [exp]	5.6	0.9504
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	9.4	0.9460
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	12.4	0.9413
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	12.8	0.9419
					Lus10031340 [exp]	14.0	0.9035
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022544 [exp]	14.7	0.8753
AT1G63430			Leucine-rich repeat protein ki...		Lus10001489 [exp]	14.8	0.8753
AT1G07120			unknown protein		Lus10031293 [exp]	15.0	0.8741
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10012523 [exp]	15.6	0.9385
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	15.9	0.9419

Compare expression of checked genes

Lus10016633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.