Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13980 394 / 1e-133 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) AT1G32330 180 / 8e-51 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G02990 177 / 9e-50 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT4G17750 176 / 3e-49 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT4G18880 173 / 4e-49 HSF AT-HSFA4A ,HSF A4A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) AT5G16820 173 / 3e-48 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT2G26150 159 / 1e-44 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G22830 157 / 6e-43 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G24520 151 / 1e-41 HSF AT-HSFC1 heat shock transcription factor C1 (.1) AT5G45710 150 / 3e-41 HSF RHA1, AT-HSFA4C ROOT HANDEDNESS 1, HEAT SHOCK TRANSCRIPTION FACTOR A4C, winged-helix DNA-binding transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022546 [exp] 857 / 0 AT4G13980 440 / 2e-151 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Lus10030956 [exp] 193 / 1e-55 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10029269 [exp] 184 / 1e-54 AT4G18880 281 / 9e-94 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10040091 [exp] 189 / 3e-54 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10007318 [exp] 186 / 7e-54 AT4G18880 355 / 3e-120 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10011065 [exp] 187 / 9e-54 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 187 / 2e-53 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10005420 [exp] 184 / 4e-52 AT4G18880 348 / 1e-116 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10015237 [exp] 178 / 7e-51 AT4G18880 363 / 9e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G320900 [exp] 499 / 3e-174 AT4G13980 508 / 3e-178 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.017G059600 [exp] 489 / 1e-170 AT4G13980 499 / 1e-174 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.004G062300 [exp] 193 / 2e-56 AT4G18880 382 / 1e-130 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.014G141400 [exp] 191 / 2e-55 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.013G079800 [exp] 192 / 4e-55 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.001G138900 [exp] 188 / 1e-53 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.011G071700 [exp] 186 / 1e-53 AT4G18880 400 / 4e-138 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.003G095000 [exp] 185 / 1e-52 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.005G214800 [exp] 174 / 5e-50 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G115700 [exp] 172 / 2e-47 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10016634 pacid=23143983 polypeptide=Lus10016634 locus=Lus10016634.g ID=Lus10016634.BGIv1.0 annot-version=v1.0 ATGGAGTCTGGTATACCAACCTCGACGACGGCCGCCGGTGGAGGAGGAGGAGTAGGTACGGCTCCTTTCCTCATAAAGACGTATGACATGGTGGACGACA CGTCCACCGACGACATCGTGTCCTGGAGCTCCTCCAACAACAGCTTCGTCGTCTGGGATCCTCCCGAATTCGCCCGACGCCTTCTTCCTGCCTACTTCAA GCACAACAATTTCTCCAGCTTCATCCGCCAATTGAACACTTATGGATTCAGGAAGAGCGATCCCGAGAGATGGGAGGTCTCCAATGAAGAGTTTATCAAA GGTCAGAAGCATCTCCTCAAAAATATCCATAGACGGAAGCCAATTCACAGCCACAGTCATCCTCAAGTTTCTTCAGATCCTGAAAGAGCAGCATTTGATG AAGAGATCGAGAGGCTCTCCCGCGAGAAGGCTCAGCTTCAGGCTAGTCTTGTAAGGTGTGAGAAGGAGAGGTCAGCTAAGAAGGTTCAGTTGGAAGATCT CAATCACCGGGTGGATAACCTGGTGGAGAGGCAAGTCAGTTTGTTATCCTTCTTAGAGAAATCTGTTCAGAATCCTGCATTTGTTCAACTTCTAATTGAC AAGATCGAAGCCATGGATGTGTCCGCGTATAGCAAGAAAAGACGATTGCCTCAACTCGAGGAATCAAGGCCAGTTGTTATTGAAAACAATGCTTTATACT GCAGTTCTAGGCCTGAGTTTGGAAATGTCATCCACCAAGATTTCTCCAGCAAGCTGAGATTGGAGTTATCTCCTGCTGTCTCCGATATTAATTTGTTCTC TCACAGCACTCAGAGCTCAAATGAAGATGGGACTAGTCTACAAGGGATGTTCTCTGGCCCCGAGCCGAGAGATACAGCATCATTAAGGACACCGGGTTTG CTCTTTTCAGCACCAGAAACATTAGACCTTTCAGATACTGGCACTTCATGTACATTCAAGGCTGATTCGTCTTTCCCAAGAAAAGTGACAACGAGTGAGA GATTGGGGTTGCTGTCACTGCAGCCCAATTCAGATTCTAATGATGAAGGCGATGGACACATTTCCTGCCTCTTGAATCTCTCTCTGGCTTCATGTTCTCT GCAAGTAAACAAAAGCCAATCATCTAAGGTGGCTCATGAAGGTCAGGAGATTACAACATCTCCAGAGTTGAGGTCCAATGTGAAGGATACAGAATGTGAC ACGAGAACCATACCAAGAAACCCAAGCATGAGTATTGATGAGAAACCAAACATAGCCCTAGCGCCAAACAAAAATGGTGCTCCAGGTCGAGTGAATGATG TTTTCTGGGAACAGTTCCTAACTGAACAACCAGGCTCCTCTGGAAATGAGGAGGCTAGTTCTCATTATAGAGCAAACCCATACGATGAACAAGAAGATAG AAGATCAGGACATGGATTGTCTAGAAATAATAGGAGCATGGAGCAGCTGTCTCTTTGA
AA sequence Show only first row Show all	>Lus10016634 pacid=23143983 polypeptide=Lus10016634 locus=Lus10016634.g ID=Lus10016634.BGIv1.0 annot-version=v1.0 MESGIPTSTTAAGGGGGVGTAPFLIKTYDMVDDTSTDDIVSWSSSNNSFVVWDPPEFARRLLPAYFKHNNFSSFIRQLNTYGFRKSDPERWEVSNEEFIK GQKHLLKNIHRRKPIHSHSHPQVSSDPERAAFDEEIERLSREKAQLQASLVRCEKERSAKKVQLEDLNHRVDNLVERQVSLLSFLEKSVQNPAFVQLLID KIEAMDVSAYSKKRRLPQLEESRPVVIENNALYCSSRPEFGNVIHQDFSSKLRLELSPAVSDINLFSHSTQSSNEDGTSLQGMFSGPEPRDTASLRTPGL LFSAPETLDLSDTGTSCTFKADSSFPRKVTTSERLGLLSLQPNSDSNDEGDGHISCLLNLSLASCSLQVNKSQSSKVAHEGQEITTSPELRSNVKDTECD TRTIPRNPSMSIDEKPNIALAPNKNGAPGRVNDVFWEQFLTEQPGSSGNEEASSHYRANPYDEQEDRRSGHGLSRNNRSMEQLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10016634 [exp]	0	1
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10028038 [exp]	1.7	0.7645
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10014844 [exp]	14.0	0.7582
AT1G56130			Leucine-rich repeat transmembr...		Lus10031199 [exp]	16.7	0.7553
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	19.0	0.7480
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	20.2	0.7569
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10004124 [exp]	20.5	0.7110
AT5G06740			Concanavalin A-like lectin pro...		Lus10028699 [exp]	22.8	0.6857
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	23.3	0.7321
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	27.6	0.7563
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10011254 [exp]	27.7	0.7581

Compare expression of checked genes

Lus10016634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.