Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38940 831 / 0 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT3G54700 830 / 0 PHT1;7 phosphate transporter 1;7 (.1) AT2G32830 820 / 0 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT5G43360 785 / 0 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT5G43350 777 / 0 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT5G43370 770 / 0 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT5G43340 675 / 0 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT1G76430 437 / 8e-149 PHT1;9 phosphate transporter 1;9 (.1) AT1G20860 430 / 4e-146 PHT1;8 phosphate transporter 1;8 (.1) AT4G08878 337 / 3e-113 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011826 [exp] 824 / 0 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10021191 [exp] 810 / 0 AT5G43350 858 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) Lus10003560 [exp] 808 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10033886 [exp] 799 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10014754 [exp] 795 / 0 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10022548 [exp] 686 / 0 AT3G54700 578 / 0.0 phosphate transporter 1;7 (.1) Lus10012860 [exp] 588 / 0 AT5G43360 669 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10030506 [exp] 583 / 0 AT5G43360 665 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10027575 [exp] 569 / 0 AT5G43360 622 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G318500 [exp] 862 / 0 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) Potri.010G071600 [exp] 845 / 0 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G072000 [exp] 838 / 0 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G223600 [exp] 823 / 0 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.010G071700 [exp] 815 / 0 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071500 [exp] 788 / 0 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.002G038900 [exp] 787 / 0 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.005G175500 [exp] 711 / 0 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1) Potri.005G175700 [exp] 687 / 0 AT3G54700 699 / 0.0 phosphate transporter 1;7 (.1) Potri.019G061900 [exp] 588 / 0 AT5G43360 637 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10016635 pacid=23143915 polypeptide=Lus10016635 locus=Lus10016635.g ID=Lus10016635.BGIv1.0 annot-version=v1.0 ATGGCGAGAGAGCAATTAGTTGTGCTCAACGCTCTCGACGTTGCCAAGACCCAATGGTACCATTTCACAGCCATCATAATCGCCGGGATGGGCTTCTTCA CAGATGCCTACGACCTCTTCTCCATCTCTCTCGTCACCCGCTTGCTGGGTCGGATCTACTACCACCACGAAGGAGCCCCCAAACCCGGTACGCTTCCTCC TAACGTTGGAGCCGCGGTCAACGGCGTCGCATTCTGCGGCACTCTAGCAGGCCAGCTCTTCTTCGGCTGGCTTGGGGACAAAATGGGAAGGAAGAAAGTG TACGGTATGACCCTTATGCTCATGGTCCTCTGCTCCTTAGCTTCTGGTCTCTCCTTTGGTGACTCTGCCGACGGAGTCATGGCTACACTCTGTTTCTTCC GCTTCTGGCTCGGCTTCGGCATCGGCGGAGATTACCCTCTCTCCGCCACTATTATGTCCGAGTACGCCAACAAGAAGACCCGTGGCGCCTTCATTGCCGC CGTCTTCGCCATGCAGGGATTCGGAATTCTAACCGGAGGGATCGTTTCCTTAATCGTCTCCGCCTCATTCGACCACGCTTTCCCGGCTCCGACGTACGAG CAGAACGGCGCTGCATCCACAGTCCCCCAGGCAGACTACGTGTGGCGGATCATCCTCATGTTCGGCGCAATTCCGGCGGCGATGACTTATTACTCACGGA GTAAGATGCCTGAGACCGCCCGGTACACGGCTCTAGTAGCGAATAACGCCAAGCAAGCTGCAAATGACATGTCGAAGGTTCTCCAGGTTGAAATCCAAGC CGAGGAGGAGAAAATCGAAGATCGGCCGTCGCGGCAATTCGGGCTGTTCAGCCGTCAATTCGCCCGGCGGCACGGGCTGCACCTCGTCGGAACTTCTGTC TGCTGGTTCCTACTGGACATTGCCTACTACAGCTCGAATCTGTTTCAGAAGGATATATTCAGTGCCATCGGATGGCTACCGCCGGCGAAGACGATGAACG CGATTCACGAGGTGTACAGAGTCTCCCGAGCTCAAACCCTAATTGCGCTCTGCGGCACTGTTCCGGGGTACTGGTTCACGGTGGCGCTAATCGACCACAT CGGCCGATTCGCAATCCAATTGATGGGGTTCTTCTTCATGACGGTGTTCATGTTCGCCCTGGCGATTCCTTACCACCACTGGACCTTGAAACCAAACAGG ATCGGGTTTCTGGTGATGTACTCGTTGACCTTCTTCTTCGCCAATTTCGGGCCCAATGCGACGACGTTTGTGGTCCCGGCAGAGATTTTTCCCGCGCGGC TGAGGTCGACTTGCCACGGGATATCGGCGGCGGCAGGGAAGGCAGGGGCGATGGGGGGAGCGTTCGGGTTCTTGTACGCGGCGCAGTCTACGGATCCGAA GAAGACGGATGCGGGTTACCCGACGGGGATTGGGGTGAAGAACTCGTTGATAGTTTTGGGGTGTATTAATTTCCTGGGGATGTTGTTCACGCTGCTGGTT CCAGAGTCGAACGGGAAGTCGCTGGAAGAGCTTTCCGGCGAGAATGAAGAGGAGGAGAGCAGCGGGAATGAAGCAGCTAGCACTGGAAGGACTGTGCCCA TATGA
AA sequence Show only first row Show all	>Lus10016635 pacid=23143915 polypeptide=Lus10016635 locus=Lus10016635.g ID=Lus10016635.BGIv1.0 annot-version=v1.0 MAREQLVVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFSISLVTRLLGRIYYHHEGAPKPGTLPPNVGAAVNGVAFCGTLAGQLFFGWLGDKMGRKKV YGMTLMLMVLCSLASGLSFGDSADGVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILTGGIVSLIVSASFDHAFPAPTYE QNGAASTVPQADYVWRIILMFGAIPAAMTYYSRSKMPETARYTALVANNAKQAANDMSKVLQVEIQAEEEKIEDRPSRQFGLFSRQFARRHGLHLVGTSV CWFLLDIAYYSSNLFQKDIFSAIGWLPPAKTMNAIHEVYRVSRAQTLIALCGTVPGYWFTVALIDHIGRFAIQLMGFFFMTVFMFALAIPYHHWTLKPNR IGFLVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAMGGAFGFLYAAQSTDPKKTDAGYPTGIGVKNSLIVLGCINFLGMLFTLLV PESNGKSLEELSGENEEEESSGNEAASTGRTVPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10016635 [exp]	0	1
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022548 [exp]	1.0	0.9440
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	3.2	0.9327
AT2G46630			unknown protein		Lus10005994 [exp]	3.5	0.9219
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10014910 [exp]	3.5	0.9258
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10022493 [exp]	6.2	0.8508
AT2G32830		PHT1;5, PHT5	PHOSPHATE TRANSPORTER 5, phosp...		Lus10022547 [exp]	8.1	0.8664
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10033041 [exp]	9.2	0.8616
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	9.5	0.9022
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	9.5	0.8845
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10008523 [exp]	10.2	0.8622

Compare expression of checked genes

Lus10016635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.