Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13830 164 / 6e-51 J20 DNAJ-like 20 (.1.2) AT3G47940 71 / 3e-14 DNAJ heat shock family protein (.1) AT1G59725 68 / 2e-13 DNAJ heat shock family protein (.1) AT5G01390 66 / 8e-13 DNAJ heat shock family protein (.1.2.3.4) AT4G36040 64 / 1e-12 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 66 / 2e-12 DNAJ heat shock family protein (.1) AT4G28480 65 / 2e-12 DNAJ heat shock family protein (.1.2) AT4G39960 65 / 3e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G10350 64 / 5e-12 DNAJ heat shock family protein (.1) AT5G25530 64 / 5e-12 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022550 [exp] 304 / 7e-106 AT4G13830 181 / 6e-58 DNAJ-like 20 (.1.2) Lus10002356 [exp] 137 / 2e-40 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10003150 [exp] 133 / 1e-38 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10002355 [exp] 132 / 1e-38 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10003149 [exp] 124 / 7e-35 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2) Lus10017263 [exp] 78 / 6e-18 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10041906 [exp] 71 / 2e-15 AT4G36040 144 / 8e-45 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10028453 [exp] 69 / 1e-14 AT2G17880 146 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Lus10040777 [exp] 69 / 1e-13 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058400 [exp] 175 / 2e-55 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.001G319100 [exp] 165 / 2e-51 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.002G020800 [exp] 77 / 1e-17 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G172300 [exp] 76 / 2e-17 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G088900 [exp] 76 / 5e-17 AT4G13830 91 / 3e-23 DNAJ-like 20 (.1.2) Potri.005G240700 [exp] 76 / 6e-17 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 73 / 5e-16 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G131800 [exp] 70 / 1e-15 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G160200 [exp] 72 / 1e-14 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.005G113100 [exp] 68 / 2e-14 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10016637 pacid=23144005 polypeptide=Lus10016637 locus=Lus10016637.g ID=Lus10016637.BGIv1.0 annot-version=v1.0 ATGGCCAGCTATCGATTGACAATTCCAACGCCCGACGCCGTTCTCTTCGGTGTCTGTTCCTCCCCTTCTCCCAGATCCCCCGACACTGCTATTCCTATCA GATCTCCGATTGGACGCCAGGGAAGTTTTTCGTTCAGGACCAGGGCCACCGCTACCGCTACAGCCACCGACACCGCAACCGACGATACTTACACCTCCGC CGCTGCGGCCGCCGCTGATGCCGCTGCTGATGCGAGCTTTTACGATCTGCTGGGAATACACGAGTCTGTGACCCAGCCTGATATTAAGCAGGCGTACAAG CAGCTGGCCCTGAAGTATCATCCGGACGTATCTCCCCCCGATCGGGTGGAGGAGTATACGCAGAAGTTCATTCGAGTCCAAGAGGCTTACGAGACGCTGT CCGATCCTCGCCGCAGGGCTCTCTACGATCGTGATATGTCCAGAGGTCTGCACTTCGCCTTCTCTTCTAGGAGACGTTACTCCAGCGATGAGGAAATTGG AGAAAGCGGATACTGGAAAAATCAGTGGGAGTCTCAGCTATCGCAGCTGAAGAGAAGAAGCTCAAGCAGGAGTGTTAATGGGAGAGAGAACATGTCATGG GCAGCTCGAATTCGCCGCCAACGGGAGGAGATGTCTGCAACTGCAAGTGGAGTATAA
AA sequence Show only first row Show all	>Lus10016637 pacid=23144005 polypeptide=Lus10016637 locus=Lus10016637.g ID=Lus10016637.BGIv1.0 annot-version=v1.0 MASYRLTIPTPDAVLFGVCSSPSPRSPDTAIPIRSPIGRQGSFSFRTRATATATATDTATDDTYTSAAAAAADAAADASFYDLLGIHESVTQPDIKQAYK QLALKYHPDVSPPDRVEEYTQKFIRVQEAYETLSDPRRRALYDRDMSRGLHFAFSSRRRYSSDEEIGESGYWKNQWESQLSQLKRRSSSRSVNGRENMSW AARIRRQREEMSATASGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10016637 [exp]	0	1
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	2.8	0.9035
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10036185 [exp]	3.0	0.8933
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10001514 [exp]	6.3	0.8731
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025899 [exp]	6.5	0.8950
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Lus10028972 [exp]	10.6	0.8784
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10022102 [exp]	14.0	0.8921
AT1G01490			Heavy metal transport/detoxifi...		Lus10007911 [exp]	16.0	0.8761
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	16.1	0.8932
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023184 [exp]	17.1	0.8605
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	17.5	0.8755

Compare expression of checked genes

Lus10016637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.