Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13840 291 / 4e-94 HXXXD-type acyl-transferase family protein (.1) AT3G23840 258 / 2e-81 HXXXD-type acyl-transferase family protein (.1) AT4G24510 237 / 2e-73 VC2, VC-2, CER2 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) AT4G29250 94 / 2e-20 HXXXD-type acyl-transferase family protein (.1) AT5G48930 74 / 6e-14 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT3G48720 71 / 6e-13 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G41040 71 / 7e-13 HXXXD-type acyl-transferase family protein (.1.2) AT2G19070 69 / 3e-12 SHT spermidine hydroxycinnamoyl transferase (.1) AT1G24430 66 / 2e-11 HXXXD-type acyl-transferase family protein (.1) AT5G63560 63 / 2e-10 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028171 [exp] 219 / 3e-66 AT4G24510 289 / 8e-94 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Lus10042870 [exp] 201 / 2e-59 AT4G24510 254 / 2e-80 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Lus10028335 [exp] 91 / 3e-19 AT4G29250 365 / 1e-122 HXXXD-type acyl-transferase family protein (.1) Lus10041782 [exp] 87 / 4e-18 AT4G29250 348 / 8e-116 HXXXD-type acyl-transferase family protein (.1) Lus10012552 [exp] 76 / 2e-14 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 74 / 5e-14 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10014695 [exp] 73 / 2e-13 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10035189 [exp] 71 / 4e-13 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 71 / 8e-13 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G319200 [exp] 422 / 4e-145 AT4G13840 356 / 6e-120 HXXXD-type acyl-transferase family protein (.1) Potri.005G153600 [exp] 293 / 8e-95 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Potri.018G032700 [exp] 122 / 3e-30 AT4G29250 437 / 5e-151 HXXXD-type acyl-transferase family protein (.1) Potri.005G028100 [exp] 94 / 2e-20 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 82 / 9e-17 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 81 / 4e-16 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 79 / 1e-15 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G052200 [exp] 79 / 2e-15 AT4G29250 207 / 9e-62 HXXXD-type acyl-transferase family protein (.1) Potri.013G039700 [exp] 78 / 3e-15 AT4G29250 218 / 2e-65 HXXXD-type acyl-transferase family protein (.1) Potri.001G042900 [exp] 76 / 9e-15 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10016638 pacid=23143979 polypeptide=Lus10016638 locus=Lus10016638.g ID=Lus10016638.BGIv1.0 annot-version=v1.0 ATGGGGTCAATTGGAAATGATGAGAGTGAGAAGGTGTACAACGTGAAGATATCGTCGGTGGGGCCGGGGAGGGCGACGCCGGTGGAAGTGGTGAAGGAGC AGCAAGGGCTGGACTTGGCAATGAAGCTCCACTATCTTAGAGGAATCTACTTCTTCACCAAGGATGCTGCTCGGGGGTTCACCACCACCCACATCAAGGA GTCCTTGTTCTACCTCTTGAACGACTACTACTTGGTCTGTGGCCGCTTCCGCCGTGACCACAACTCCTCCTCCTCCTCCTCCTCCTCCCGTCCCTACATG AAGTGCAACGACTGCGGGGTTCGCTTCGTGGAGGCGGAATGCCGTGACACGGTGGAGGAGTGGATCCGGGATCATTATGTCTCCGGCAAGGGTAACAACA ATGTTAACCTCCTTGCTTACCATCTCCCTATTGGCCCTGACCTCTTCTTCTCTCCTCCCCTCTATCTGCAGGTAACGAAGTTCAAGTGTGGAGGGATGTC ATTAGGCCTGAGTTGGGCCCACATAATCGGAGACTTCTACTCAACTGTTGATTTCATGAACAGTTGGGGTAATTTTCTTTCCGGGCTTAAGTCCAATAGG AATTTCCAACATATAAGCAGGCCCATGAATCATACTCTCCCTAACAGCCCAAACACCGAAAACCCAGACCACCTACCACTCTCCCTGAAACGGGTCAACC CGGTTGGCAATAATTGGGTAACCACCAATAACTGCAAAATGCAGAGTTTCTCCTTGTGCATATCAGCACCTCAAGCAATTCATCTCCACACCAAAATCAC CGGGCAACAGATCCCAAACAACTCCAAGATAACAATCTTCGAATCGGTTGGCGCTGCCTTTTGGCAATCGATTGCGAAGATTCGAGAAGGGACAAATGAA CCTAGAAGGGTGACTATATGCAAAAAGGATAATGACTTTGATATGTCCCAAAATGCGATTATCATCAATAACGGTCGGGTGGCGATCAGCTCTATTACGG CCGACTTCTCTGTGGCGAGTTCAGAGTTGGAGGATCTAGCAAAATGGTTATCGGATCGAATTGCAAATTCCTACGATGAAAAGGCTCTGATCAATGAAGA GGTGGAGAAGGAGAATGGGATATCAGACTACATTGTGTACGGTGCGAACTTGACATTTGTGGATTTTGAAGGGACGGATGTGTACGAACTGGAGTGCAAT GGGTATAAGCCGAAATTCGTGAATTACGAGGTCGAGGGAGTCGGAGATGAAGGGGCGGTGGTAGTGCTTCCTAGTTTGGATAAGGATGGGAATGAAGGGA GAGTTGTGACGGCAATCCTACCGGAGAAAGAAGTCGGAAGGCTCAAGTTTGAGCTCAACAAGATTGGCTTCTCGGTAGAAGCAAACAACGTTGAATTGTA A
AA sequence Show only first row Show all	>Lus10016638 pacid=23143979 polypeptide=Lus10016638 locus=Lus10016638.g ID=Lus10016638.BGIv1.0 annot-version=v1.0 MGSIGNDESEKVYNVKISSVGPGRATPVEVVKEQQGLDLAMKLHYLRGIYFFTKDAARGFTTTHIKESLFYLLNDYYLVCGRFRRDHNSSSSSSSSRPYM KCNDCGVRFVEAECRDTVEEWIRDHYVSGKGNNNVNLLAYHLPIGPDLFFSPPLYLQVTKFKCGGMSLGLSWAHIIGDFYSTVDFMNSWGNFLSGLKSNR NFQHISRPMNHTLPNSPNTENPDHLPLSLKRVNPVGNNWVTTNNCKMQSFSLCISAPQAIHLHTKITGQQIPNNSKITIFESVGAAFWQSIAKIREGTNE PRRVTICKKDNDFDMSQNAIIINNGRVAISSITADFSVASSELEDLAKWLSDRIANSYDEKALINEEVEKENGISDYIVYGANLTFVDFEGTDVYELECN GYKPKFVNYEVEGVGDEGAVVVLPSLDKDGNEGRVVTAILPEKEVGRLKFELNKIGFSVEANNVEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13840			HXXXD-type acyl-transferase fa...		Lus10016638 [exp]	0	1
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10004642 [exp]	2.4	0.8527
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	9.0	0.8581
AT1G44960			SNARE associated Golgi protein...		Lus10028709 [exp]	12.5	0.8237
AT2G13690			PRLI-interacting factor, putat...		Lus10020892 [exp]	17.3	0.8052
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	27.7	0.8252
AT3G13130			unknown protein		Lus10016611 [exp]	28.5	0.8443
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040697 [exp]	30.1	0.8387
AT3G27200			Cupredoxin superfamily protein...		Lus10041570 [exp]	32.9	0.8421
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	34.3	0.8408
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10028141 [exp]	41.4	0.7954

Compare expression of checked genes

Lus10016638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.