Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13850 168 / 2e-54 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G23830 156 / 5e-50 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT5G61030 130 / 1e-37 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT1G74230 125 / 5e-36 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT5G47320 120 / 4e-35 RPS19 ribosomal protein S19 (.1) AT2G21660 98 / 1e-26 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT3G08000 91 / 4e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G39260 89 / 7e-24 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT4G13860 89 / 8e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 89 / 2e-23 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022551 [exp] 237 / 8e-82 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10032591 [exp] 199 / 8e-67 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10043158 [exp] 192 / 4e-64 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10021154 [exp] 136 / 3e-40 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10017852 [exp] 130 / 4e-38 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10040519 [exp] 135 / 2e-37 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1) Lus10034685 [exp] 122 / 5e-35 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10026343 [exp] 94 / 5e-25 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) Lus10040454 [exp] 96 / 6e-25 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G059000 [exp] 165 / 1e-53 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319900 [exp] 156 / 7e-50 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319800 [exp] 155 / 1e-49 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.015G057400 [exp] 136 / 7e-41 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.012G061600 [exp] 134 / 5e-40 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.004G155300 [exp] 99 / 9e-27 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 98 / 1e-26 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.001G236300 [exp] 92 / 4e-25 AT4G13850 88 / 1e-23 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.014G157300 [exp] 92 / 1e-24 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G207100 [exp] 91 / 4e-23 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10016639 pacid=23143918 polypeptide=Lus10016639 locus=Lus10016639.g ID=Lus10016639.BGIv1.0 annot-version=v1.0 ATGGCGTTTTGCAACAAATTGGGTAGCCTAGTGAGGCGGAGTGTATCTCAGAATGGTCCTTCCCCGTTGGGTTCTTTGTTGAACTCCGTCCGTTGCATGT CAAGCAAGCTCTTTATCGGAGGTCTTTCTTATTCCACCGATGATCAAACTCTCAAGGAGGCCTTTGAGAGTTATGGTGATGTGATTGATGCCAAAGTAAT CATTGACAGAGACACTGGTAGGTCACGAGGGTTTGGATTTGTGAATTTCTCAGACAGCGAGGCTGCAAACTCTGCATTGTCAGGCATGGATGGGCAGGAG TTGCATGGTAGGAACATCCGCGTGAGTTTGGCTAATGAAAGACAGAGTGCTCCACGAACCTACAACAACTACCGTGGTGGCGGTGGTGGTTATGATGGTG GGAACAGAGGATTCGGTGGGAACGATGGGTACTAG
AA sequence Show only first row Show all	>Lus10016639 pacid=23143918 polypeptide=Lus10016639 locus=Lus10016639.g ID=Lus10016639.BGIv1.0 annot-version=v1.0 MAFCNKLGSLVRRSVSQNGPSPLGSLLNSVRCMSSKLFIGGLSYSTDDQTLKEAFESYGDVIDAKVIIDRDTGRSRGFGFVNFSDSEAANSALSGMDGQE LHGRNIRVSLANERQSAPRTYNNYRGGGGGYDGGNRGFGGNDGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10016639 [exp]	0	1
AT1G14060			GCK domain-containing protein ...		Lus10026621 [exp]	4.7	0.8947
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10022881 [exp]	15.1	0.8728
AT5G43790			Pentatricopeptide repeat (PPR)...		Lus10039388 [exp]	18.0	0.8659
AT5G25500			unknown protein		Lus10002897 [exp]	18.3	0.8575
AT3G53630			unknown protein		Lus10003983 [exp]	21.6	0.8702
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	22.1	0.8384
AT5G57290			60S acidic ribosomal protein f...		Lus10010890 [exp]	28.1	0.8679
AT5G14050			Transducin/WD40 repeat-like su...		Lus10036236 [exp]	31.2	0.8559
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030601 [exp]	37.1	0.8501
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10000117 [exp]	38.1	0.8477

Compare expression of checked genes

Lus10016639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.