Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23820 673 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT1G02000 552 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 549 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 534 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT4G12250 523 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G30440 523 / 0 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT4G23920 102 / 1e-23 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G12780 96 / 2e-21 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT4G10960 95 / 3e-21 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT1G63180 88 / 6e-19 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022552 [exp] 776 / 0 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10015876 [exp] 551 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 549 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 547 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 544 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10032391 [exp] 518 / 0 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10008893 [exp] 516 / 0 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10031127 [exp] 514 / 0 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015496 [exp] 501 / 2e-176 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G320000 [exp] 684 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 682 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.002G146500 [exp] 554 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.014G068400 [exp] 554 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.003G114600 [exp] 518 / 0 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.012G128200 [exp] 514 / 0 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.006G178500 [exp] 494 / 2e-173 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.018G100400 [exp] 486 / 2e-170 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G116750 [exp] 170 / 3e-51 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.003G123700 [exp] 103 / 3e-24 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10016640 pacid=23143994 polypeptide=Lus10016640 locus=Lus10016640.g ID=Lus10016640.BGIv1.0 annot-version=v1.0 ATGGCCTCCCCACCTGACACCAGCAAGACAATCAAGCTAGAGCGCTACAACAGCTACTTGCGCCGGATACAGAGCACTAAGCTCTTAAACGCCTCCTCCA AGCTCCTCTTTCGCGCTACTCTACTCATTGCTCTCCTCCTCATTCTCTTCTTCACCATCAATTACCCTCACCTCTCCCACCACCACCGCCTCCATTCCGA CTCCACAATTCACCGACACAGCTTCTTATCCACTGGCGGCAGCTTTTTCTCCTCTTCCTTTTCCACTTCCTCCTCCTCCGCAATTGGCGGATCCGCTTGG GAGAAACAGGTCCGTCGCTCCTCCACTCCTCGCCGCCCCAACGGATTCTCCATCCTTGTTACTGGAGCTGCCGGATTCGTCGGAAGTCATTGCTCCCTCG CGCTCAGGAAGCGAGGCGATGGAGTTCTCGGCCTCGACAATTTCAACAGCTACTATGATCCTTCGCTCAAGAGATCTCGCCAGGAGATGTTGCTCAAGCA CGAGGTGTTCATCGTAGAAGGGGATCTGAACGATGGTCCGCTTCTCACCAAGCTATTCGACGTCGTCCCGTTCTCTCACATCCTCCACTTAGCTGCTCAA GCTGGAGTCCGCTACGCGATGCAGAATCCCCAATCTTATATCAGCTCCAACATTGCCGGATTCATCAACCTCTTGGAAGTTGCCAAGGCAGCCAATCCGC AGCCGGCAATCGTCTGGGCGTCCTCCAGCTCCGTCTACGGTCTGAACACCAATGTCCCTTTCTCCGAGAGCCACCGCACCGACAGGCCGGCGAGCCTCTA CGCCGCCACGAAGAAGGCCGGAGAGGAAATTGCACACACCTACAACCACATCTACGGATTGTCCCTGACCGGACTCCGATTCTTCACGGTGTACGGCCCC TGGGGACGCCCTGACATGGCTTACTTCTTCTTCACCAAGGACATCCTGAACGGGAAATCGATCGATGTGTACGAGACTCAGGAAGGGAAGCAAGTGGCGC GTGACTTCACGTATATTGACGACGTGGTGAAGGGATGCTTAGGGGCTCTGGACACTGCGGAGAAGAGCACGGGAAGCGGAGGGAAGAAGAAAGGGGCAGC CCAGCTTAGGGTATACAACTTGGGGAACACATCGCCGGTGCCGGTGGGGCAGCTGGTGTCGATATTGGAGGCGCTACTGAGCAAGAAGGCGAAGAAGCAC GTGGTAACGATGCCTCGAAACGGCGACGTTCCATTCACCCACGCGAACGTGAGCCAGGCGTTCAGGGATTTCGGGTACAAGCCGACGACGGATTTGGCGA GCGGGTTGAGGAAGTTCGTGAAGTGGTACGTTGGTTATTACGGGGAGAAGACGAGGGTAAAGAAGGAAACAGGTGAGGTGGTGGACAAGTCATCAACATG A
AA sequence Show only first row Show all	>Lus10016640 pacid=23143994 polypeptide=Lus10016640 locus=Lus10016640.g ID=Lus10016640.BGIv1.0 annot-version=v1.0 MASPPDTSKTIKLERYNSYLRRIQSTKLLNASSKLLFRATLLIALLLILFFTINYPHLSHHHRLHSDSTIHRHSFLSTGGSFFSSSFSTSSSSAIGGSAW EKQVRRSSTPRRPNGFSILVTGAAGFVGSHCSLALRKRGDGVLGLDNFNSYYDPSLKRSRQEMLLKHEVFIVEGDLNDGPLLTKLFDVVPFSHILHLAAQ AGVRYAMQNPQSYISSNIAGFINLLEVAKAANPQPAIVWASSSSVYGLNTNVPFSESHRTDRPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGP WGRPDMAYFFFTKDILNGKSIDVYETQEGKQVARDFTYIDDVVKGCLGALDTAEKSTGSGGKKKGAAQLRVYNLGNTSPVPVGQLVSILEALLSKKAKKH VVTMPRNGDVPFTHANVSQAFRDFGYKPTTDLASGLRKFVKWYVGYYGEKTRVKKETGEVVDKSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10016640 [exp]	0	1
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10022552 [exp]	1.0	0.9479
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10004159 [exp]	2.0	0.9201
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10008615 [exp]	3.7	0.8888
AT4G29340		PRF4	profilin 4 (.1)		Lus10034988 [exp]	4.5	0.8977
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	4.6	0.9033
AT5G52540			Protein of unknown function (D...		Lus10039273 [exp]	4.9	0.8876
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037519 [exp]	5.2	0.8853
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	5.5	0.8935
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	8.5	0.8734
AT3G06150			unknown protein		Lus10004424 [exp]	12.2	0.8833

Compare expression of checked genes

Lus10016640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.