Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13870 95 / 4e-25 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022556 [exp] 151 / 8e-47 AT4G13870 246 / 1e-80 Werner syndrome-like exonuclease (.1.2) Lus10013769 [exp] 47 / 3e-07 AT4G13870 105 / 4e-27 Werner syndrome-like exonuclease (.1.2) Lus10039164 [exp] 47 / 3e-07 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G059200 [exp] 112 / 1e-31 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.001G320201 [exp] 88 / 2e-23 AT4G13870 0 / 1 Werner syndrome-like exonuclease (.1.2) Potri.016G028700 [exp] 39 / 0.0001 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2) Potri.006G031400 [exp] 39 / 0.0002 AT3G12410 101 / 2e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10016641 pacid=23144000 polypeptide=Lus10016641 locus=Lus10016641.g ID=Lus10016641.BGIv1.0 annot-version=v1.0 ATGCAGCTTTTTGCAGATGTTGGCCAATGCTACGTGATGCATATTATTCATTCTGGAATCACTCCCAGTCTACGGCTGCTTCTTCAGGATGACACACTCT TAAAAGTTGGTGTTGGGATTGGCAATGATTCTACCAAGGTTTTTAGAGATTATAATGTCTCTGTTCAAGCTGTGGAGGACCTTTCCTGCCTAGCTAATCA AAAGCTTGGTGGAGAACCAAAAAAATGGGGTCTTGCAGCTTTAGCCGAGACGCTTGTCTCGAAAGAGAGCTTTCTATTGTCCTTGTGA
AA sequence Show only first row Show all	>Lus10016641 pacid=23144000 polypeptide=Lus10016641 locus=Lus10016641.g ID=Lus10016641.BGIv1.0 annot-version=v1.0 MQLFADVGQCYVMHIIHSGITPSLRLLLQDDTLLKVGVGIGNDSTKVFRDYNVSVQAVEDLSCLANQKLGGEPKKWGLAALAETLVSKESFLLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10016641 [exp]	0	1
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022446 [exp]	6.2	0.7811
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003324 [exp]	11.9	0.7625
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10027455 [exp]	12.4	0.7520
AT1G51370			F-box/RNI-like/FBD-like domain...		Lus10027020 [exp]	14.1	0.7779
AT3G06150			unknown protein		Lus10034027 [exp]	24.7	0.7622
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10023140 [exp]	27.1	0.7436
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003325 [exp]	27.7	0.7502
AT1G62730			Terpenoid synthases superfamil...		Lus10024610 [exp]	27.7	0.7475
AT3G58610			ketol-acid reductoisomerase (....		Lus10022849 [exp]	28.8	0.7468
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043276 [exp]	32.2	0.7372

Compare expression of checked genes

Lus10016641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.