Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016642 pacid=23143957 polypeptide=Lus10016642 locus=Lus10016642.g ID=Lus10016642.BGIv1.0 annot-version=v1.0 ATGGCTTCAAGATCCTGCTCCGTCAAGGGCTCGTCTAAATCTGGAACAGAGGGAAAAGGCGAGGAAGAACAGGAAATTGCGGCGCTTCTCGAAGCAGAAT ACATTCTTCTACTACAACAACAACAAAGTCTTCAGGGTCACTCCTATGCTACGGTGGCTGGTCGCCAGCCTTTCTGGGTCAAACTTCCTAGGTCAAACTT CAATATGAAGATTTACCAACTGCGTGCTATATTTGTGGTCTCCTTGGTCATGGTCATGGTCACTGCCCTTATGCAGCAATTCTTCCCCATAATTCCGAGG AACGCGGTCCGTGGATGCAAGCTAAACCTGATGGCCATTTTATCGTTTAGGATTACATTCTTCTCATAA
AA sequence Show only first row Show all	>Lus10016642 pacid=23143957 polypeptide=Lus10016642 locus=Lus10016642.g ID=Lus10016642.BGIv1.0 annot-version=v1.0 MASRSCSVKGSSKSGTEGKGEEEQEIAALLEAEYILLLQQQQSLQGHSYATVAGRQPFWVKLPRSNFNMKIYQLRAIFVVSLVMVMVTALMQQFFPIIPR NAVRGCKLNLMAILSFRITFFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016642 [exp]	0	1
AT5G66650			Protein of unknown function (D...		Lus10005312 [exp]	1.0	0.8706
					Lus10007785 [exp]	5.5	0.6934
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	6.3	0.7538
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040148 [exp]	8.8	0.6633
					Lus10034269 [exp]	9.5	0.7346
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002937 [exp]	17.1	0.6710
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10009231 [exp]	17.5	0.6657
					Lus10020961 [exp]	17.9	0.6700
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	18.5	0.7193
AT4G16060			unknown protein		Lus10016832 [exp]	21.2	0.6378

Compare expression of checked genes

Lus10016642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.