Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31970 1060 / 0 ATRAD50, RAD50 DNA repair-recombination protein (RAD50) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G320300 [exp] 1254 / 0 AT2G31970 1878 / 0.0 DNA repair-recombination protein (RAD50) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04423 [flax] [poplar] Rad50_zn_hook Rad50 zinc hook motif
Representative CDS sequence Show only first row Show all	>Lus10016643 pacid=23143982 polypeptide=Lus10016643 locus=Lus10016643.g ID=Lus10016643.BGIv1.0 annot-version=v1.0 ATGAGTACAGTTGATAAGATGCTGATAAAAGGAATCCGGAGTTTCCACCCGGAGAACAAGCACGTCATCACCTTCTTCAAACCACTTACCCTAATCGTCG GCTCCAACGGTGCCGGGAAAACTACCATTATAGAATGCTTGAAGGTTGCATGCACTGGTGAGCTGCCCCCAAATGCAAGGAATGGACACAGTTTCGTTCA TGATCCTAAGGTTGCCGGTGAAACTGAGACAAAGGGACAAATTAAGCTCCGATTCAAGACTGCTGCTGGTAAGGATGTTGTATGCATAAGGTCCTTTCAG CTGACACAGAAGGCCTCCAAGCTGGAGTATAAGGCAATCGAGAGTGTGCTTCAGACGATCAATCCGCACACTGGGGAGGCTAGAGGATTATTTGGTGGGC TATTTAGGAATGCAGGAACAGGAAGCCTTAATGTAGTGGATTTGACTCGTAGAATCCAGTTTGAGGTTCGGTGCAAGCAGGGCATTCTAGATTTTCACTT GGCTTATATCATGGTTGGCAACACTGGCCTAGTTGTTCTGGCTACTATTGGACCTGTTCTCATTTGTAAAGTCTGTCTTAGCTATCGATGTGCTGACATG GATAGGGAAATCCCTGCTTTGATGGGTGTTTCAAAGGCTGTTCTTGAAAATGTCATATTCGTCCACCAAGATGAAGCTAATTGGCCATTACAAGACCCTT CCTCATTGAAAAAGAAGTTTGATGATATATTCTCTGCGACAAGATATACCAAGGCTTTGGAGGTCATCAAGAAACTTCACAAGGACCAAGCTCAGGAAAT TAAAGCATACAAGCTTAAATTGGAGAATCTCCAAACCCTGAAGGATTCTGCATATAAGCTTCGTGAAAGCATTTCGCAAGATCAAGAAAAGACGGAATCA TTAAAAATAAAAATGCAAGACCTAGAAAGTAACATTCAAAATGTAGAAGGGAGGATCCAAGACACTAAATCAATACTTGAAGAGGCGAGGAACCTACAGA AAGAAATATCCACCAAGGATGCAGAAAGGGGGCTTCGGGTTGATGAGATGGAGCGGCTACTTGCTACTCTTGATTCAGAAATAACAGATGATGATGAGGA ACTGATTTCCTGGAAGCAAACTTTTGATACACGTCTGGCTACATTGAACACGAAAATCAGCAGATTGGAGAGGGAAATGAATGATGCAGATAAGAAAGCT TCCAATCTTAAGAAGACAATCAATGACTCAATCCTAGCAATTGGACGGCTTCAAGCTGCTACGGATGCTCATACTTCCTTGAAGAATGAAAGAGATTCTA CCATCCATGGAGTTTGTGCAAGGTATAATGTCGGGTCTCTGCATGACACCCCATTAACGGATGAGATGGCTTTGAATCTTACTGAATGCCTGGAATCAAG GTCAATGAATCTTAAGAAAGATTTACAAGAGAAAAAGAAATTAAATGATATCCAAGTTAAGGCAGCAGAGAAAAACTGCAGGGATGCCAGTGACGCATGG AGAGTTGCTGAGGCTCAACTACAGGCTAAACAAGAATTAAAGAATAATTTATCTGATCGCATTAAGGAAAAGGAAAATGAGCTTGCAGCGTTGGAAGAAC AACTATCCCATGCCAATCTTCCCCGTATTGATGAGAAGGAAAAGAACATGGCTATTGAGGTTGGAAGAAAAACTAATCAGCTTTCTGAAAGAGACTTTGA GTCAAATATACGACAGAAGCAAAGTGAGTTGTATGGTATTGAACAAAAAATTAAGGCACTTAATCGGGACAAAGATCTCCTTGCTGTTTATGCCGAGGAT AGAATAGTGCTGTCTCTCAAGAGATCAGAATTAGATAATCACAAAAAGAAGCATAGAAAAATAATTGATGAATACAAAGATAAGATCAGAGGGGTGCTAA AAGGGAGGCTTCCTTCTGATAAGGATTTGAAGAAAGAAGTTACTCAAGCCCTTAGGGCTCTGGGAAATGAGTTCGATGACTTGAATACAAAATCCCGTGA TGCAGAGAAGGAGGTGAATGTGTTGCACCTGAAAATACAAGAGACCAATAATAATATCTCCAGATTCCACAAAGATATGGATGCTAAGAAGAGATTTATT GAATCCAAACTTCAGTCATTGGATCAGCAATCTTTCACCATCGAGTCTTACTTTAAAGTGCTAGAATCAGCAAAGGAGAAGAGAGATGTCCAGAAAAGCA AGTATAACATCGCTGATGGCATGCGGCAGATGTTTGATCCGTTTGAACGAGTTGCCAGAGCTCATCATGTCTGCCCTTGCTGTGAGCGTCCTTTTTCCTC TGAGGAGGAAGATGAATTTGTCAAAAAGCAAAGAGTTAAAGCTGCAAGTTCTGCCGAGCACATAAAAAAGTTGGCCATAGAGACTTCAAATTCAGATTCT CTCTTTCAACAGCTGGACAAGCTCCGTATAGCATATGAAGAGTATGTCAAACTAGGCAAAGATGCTATACCGCTTGCAGAAAAATCTCTGCATGATCTTC AGCACGAGCTTGATCAGAAGTCACAGGCCCTTGATGATATGTGGGTTGGTTGTAGAGTCGGTAGGATGAAATTGCTAGGTCATGGATCAGTGATAGGTGG AGGTCTATGCGACAATTTGGCAATGCCTTATTTTTCTTGGGTTTTGGGGATCTTGGCCCAGATTAAGGCTGACAAGGACTTGGTTGATGTATTAGTGCAA CCTATGGACACTGCAGATAGGCTTTATCAAGAAATTCAGACTTTGCAAGAGCAAGTACGTATTTTGGAGGAACAGCTTGATGGTCAAGGGCAAGGTGCCA GATCTATGGAAGTGATGCAGTCAGAACTTAATTGTTTACAGAGTACAAGGGATTCCCTGCAGAGTGAACTGGAAAATTTAAGGGATGAGCAGAGATATAT GGAAAATGATTTGCAGCACATTCAACTACGTTGGCATGCCATGAGGGAGGAAAAGGTTGCTGCATCGAACATATTAAGTAATGTTAAAAGGCTAGAGAAA GAATTGGAAAATCTGGCCGTGGAAAAGAATGAAGCTGAGCTTGCTGTGAAGATTTGA
AA sequence Show only first row Show all	>Lus10016643 pacid=23143982 polypeptide=Lus10016643 locus=Lus10016643.g ID=Lus10016643.BGIv1.0 annot-version=v1.0 MSTVDKMLIKGIRSFHPENKHVITFFKPLTLIVGSNGAGKTTIIECLKVACTGELPPNARNGHSFVHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQ LTQKASKLEYKAIESVLQTINPHTGEARGLFGGLFRNAGTGSLNVVDLTRRIQFEVRCKQGILDFHLAYIMVGNTGLVVLATIGPVLICKVCLSYRCADM DREIPALMGVSKAVLENVIFVHQDEANWPLQDPSSLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKAYKLKLENLQTLKDSAYKLRESISQDQEKTES LKIKMQDLESNIQNVEGRIQDTKSILEEARNLQKEISTKDAERGLRVDEMERLLATLDSEITDDDEELISWKQTFDTRLATLNTKISRLEREMNDADKKA SNLKKTINDSILAIGRLQAATDAHTSLKNERDSTIHGVCARYNVGSLHDTPLTDEMALNLTECLESRSMNLKKDLQEKKKLNDIQVKAAEKNCRDASDAW RVAEAQLQAKQELKNNLSDRIKEKENELAALEEQLSHANLPRIDEKEKNMAIEVGRKTNQLSERDFESNIRQKQSELYGIEQKIKALNRDKDLLAVYAED RIVLSLKRSELDNHKKKHRKIIDEYKDKIRGVLKGRLPSDKDLKKEVTQALRALGNEFDDLNTKSRDAEKEVNVLHLKIQETNNNISRFHKDMDAKKRFI ESKLQSLDQQSFTIESYFKVLESAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSSEEEDEFVKKQRVKAASSAEHIKKLAIETSNSDS LFQQLDKLRIAYEEYVKLGKDAIPLAEKSLHDLQHELDQKSQALDDMWVGCRVGRMKLLGHGSVIGGGLCDNLAMPYFSWVLGILAQIKADKDLVDVLVQ PMDTADRLYQEIQTLQEQVRILEEQLDGQGQGARSMEVMQSELNCLQSTRDSLQSELENLRDEQRYMENDLQHIQLRWHAMREEKVAASNILSNVKRLEK ELENLAVEKNEAELAVKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016643 [exp]	0	1
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10007462 [exp]	6.2	0.8569
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	9.4	0.8620
AT4G04180			P-loop containing nucleoside t...		Lus10040913 [exp]	17.0	0.7629
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10019489 [exp]	17.2	0.8123
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	19.9	0.8287
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	23.7	0.8142
AT1G74350			Intron maturase, type II famil...		Lus10021359 [exp]	26.0	0.7986
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10001005 [exp]	30.9	0.8020
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	33.8	0.7911
AT1G16800			P-loop containing nucleoside t...		Lus10037303 [exp]	40.7	0.7903

Compare expression of checked genes

Lus10016643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.