Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31970 570 / 0 ATRAD50, RAD50 DNA repair-recombination protein (RAD50) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G320300 [exp] 613 / 0 AT2G31970 1878 / 0.0 DNA repair-recombination protein (RAD50) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016644 pacid=23143986 polypeptide=Lus10016644 locus=Lus10016644.g ID=Lus10016644.BGIv1.0 annot-version=v1.0 ATGACCTTATTTGTATTTATATCCATTTCATTCCTTTTCCAGGATTTAGCTGAAAACTTAGGCCCTTTATCTAAAGCGAAAGAGAAGCTAGAGAGTGATT ATGAAAAGTTAAAAAACGACCTTGAGCTGGAGTACGAGAAACAGAGGAAAGAGTTGGATAACTATCTGTTTGAAGTTGACACGGTGCAAAAGTTGATGTC TAAAATTAAAGAGTACTATGATCTTAAAACAGGTGTGAGATTGAAAGAGGCACAAGAAAAGTTAGCTACATCTGAGTCTCAACTTGAATCTTGTGAAACA GTAAAAGGGCAACATTCAAATGAATTAAGCGTGTTGAAGGGAAAAGTGGAACAGCAAGATAAATGCAGAAGAGATATCGAAGACAACATAAATTATAGGA AAATTAAGGCTGACATCGAGGTGCGTACTAAGGAGATTGAATCATTAGAAAAGAAGCTTCTACAGATAGGTGCATCCTCAAAGTACGAAGCTGATCTCAT CAAGTTTGGAGAAGAAAGGGACATGCTTAACGCAGAGTTCAACAAATGTGAAGGAACAATGTCGGTGTATCAAGAGAATATCTCCAATAATAAAGTTGAT CTTAAGCAGCCACTTTATAAGGATATAGACAAGCGGTACTTCGATCAGCTAATACAGCTCAAGACTACTGAAATGGCCAACAAGGACCTTGACAGATACT ACAGTGCCCTTGACAAAGCTCTCATGCGCTTCCACTCCATGAAGATGGAGGAAATCAACAAAATAGTCAGGGAATTGTGGCAGCAAACCTATAGGGGACA GGATATAGATTACATAAGGATACATTCTGATCCTGAAGGTTCTGGGACTCGTTCGTACAGCTACAAGGTACTCATGCAGACCGGTGATACAGAGCTTGAA ATGAGAGGAAGGTGCAGCGCTGGGCAGAAGGTTCTTGCATCACTCATAATTCGATTAGCGTTAGCGGAAACGTTCTGCCTCAACTGTGGAATACTAGCTC TAGATGAACCTACAACAAACTTGGACGGGCCAAATGCAGAGAGTCTGGCTGCTGCTTTGCTAAGAATAATGAATGACAGGAAGGGGCAGGAGAACTTCCA GCTGATTGTAATAACTCATGATGAGCGTTTTGCTCAGATGATTGGGCAGCGCCAGCATGCTGAACGATATTATAGAATCTCAAAAGATGACCACCAACAC AGCATAATCGAAGCTCAAGCGATCTTCGATTGA
AA sequence Show only first row Show all	>Lus10016644 pacid=23143986 polypeptide=Lus10016644 locus=Lus10016644.g ID=Lus10016644.BGIv1.0 annot-version=v1.0 MTLFVFISISFLFQDLAENLGPLSKAKEKLESDYEKLKNDLELEYEKQRKELDNYLFEVDTVQKLMSKIKEYYDLKTGVRLKEAQEKLATSESQLESCET VKGQHSNELSVLKGKVEQQDKCRRDIEDNINYRKIKADIEVRTKEIESLEKKLLQIGASSKYEADLIKFGEERDMLNAEFNKCEGTMSVYQENISNNKVD LKQPLYKDIDKRYFDQLIQLKTTEMANKDLDRYYSALDKALMRFHSMKMEEINKIVRELWQQTYRGQDIDYIRIHSDPEGSGTRSYSYKVLMQTGDTELE MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMNDRKGQENFQLIVITHDERFAQMIGQRQHAERYYRISKDDHQH SIIEAQAIFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016644 [exp]	0	1
AT2G04940			scramblase-related (.1)		Lus10010075 [exp]	1.4	0.8602
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	2.0	0.8739
AT1G59077			unknown protein		Lus10022089 [exp]	4.6	0.8568
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	5.3	0.8354
AT1G60200			splicing factor PWI domain-con...		Lus10030623 [exp]	8.8	0.8146
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10017683 [exp]	9.2	0.8413
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10038139 [exp]	9.8	0.8345
AT4G05160			AMP-dependent synthetase and l...		Lus10013831 [exp]	14.1	0.7996
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	14.7	0.8052
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	17.3	0.8149

Compare expression of checked genes

Lus10016644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.