Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13950 92 / 3e-25 RALFL31 ralf-like 31 (.1) AT3G23805 86 / 8e-23 RALFL24 ralf-like 24 (.1) AT3G05490 68 / 8e-16 RALFL22 ralf-like 22 (.1) AT3G16570 67 / 3e-15 ATRALF23, RALFL23 ARABIDOPSIS RAPID ALKALINIZATION FACTOR 23, rapid alkalinization factor 23 (.1) AT4G15800 64 / 2e-14 RALFL33 ralf-like 33 (.1) AT1G02900 62 / 1e-13 RALF1, RALFL1, ATRALF1 RALF-LIKE 1, rapid alkalinization factor 1 (.1) AT2G33775 62 / 2e-13 RALFL19 ralf-like 19 (.1) AT1G28270 59 / 2e-12 RALFL4 ralf-like 4 (.1) AT5G67070 41 / 2e-05 RALFL34 ralf-like 34 (.1) AT1G35467 40 / 3e-05 RALFL5 RALF-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022561 [exp] 164 / 8e-54 AT4G13950 100 / 1e-28 ralf-like 31 (.1) Lus10020647 [exp] 71 / 1e-16 AT4G15800 119 / 5e-36 ralf-like 33 (.1) Lus10029893 [exp] 70 / 1e-16 AT4G15800 116 / 8e-35 ralf-like 33 (.1) Lus10015172 [exp] 68 / 8e-16 AT4G15800 107 / 2e-31 ralf-like 33 (.1) Lus10037512 [exp] 64 / 2e-14 AT4G15800 131 / 9e-41 ralf-like 33 (.1) Lus10000502 [exp] 63 / 7e-14 AT4G15800 134 / 1e-41 ralf-like 33 (.1) Lus10025444 [exp] 56 / 4e-11 AT1G28270 100 / 2e-28 ralf-like 4 (.1) Lus10015316 [exp] 56 / 5e-11 AT1G28270 100 / 7e-29 ralf-like 4 (.1) Lus10015431 [exp] 52 / 2e-09 AT1G28270 81 / 7e-21 ralf-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G320700 [exp] 93 / 2e-25 AT3G23805 96 / 1e-26 ralf-like 24 (.1) Potri.017G059500 [exp] 86 / 2e-22 AT4G13950 96 / 2e-26 ralf-like 31 (.1) Potri.004G044900 [exp] 63 / 5e-14 AT1G28270 103 / 4e-30 ralf-like 4 (.1) Potri.004G045000 [exp] 63 / 6e-14 AT1G28270 103 / 4e-30 ralf-like 4 (.1) Potri.008G208200 [exp] 61 / 3e-13 AT4G15800 132 / 2e-41 ralf-like 33 (.1) Potri.005G025800 [exp] 61 / 5e-13 AT4G15800 138 / 1e-43 ralf-like 33 (.1) Potri.013G017400 [exp] 61 / 8e-13 AT4G15800 123 / 1e-37 ralf-like 33 (.1) Potri.014G131800 [exp] 58 / 7e-12 AT4G15800 123 / 1e-37 ralf-like 33 (.1) Potri.007G044700 [exp] 46 / 2e-07 AT5G67070 119 / 1e-35 ralf-like 34 (.1) Potri.005G139100 [exp] 44 / 2e-06 AT5G67070 118 / 4e-35 ralf-like 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05498 [flax] [poplar] RALF Rapid ALkalinization Factor (RALF)
Representative CDS sequence Show only first row Show all	>Lus10016646 pacid=23143913 polypeptide=Lus10016646 locus=Lus10016646.g ID=Lus10016646.BGIv1.0 annot-version=v1.0 ATGCTGCTAAAGCCCTTCACTTTCCTCCAAATTCTCTTCTTGTCTCTCATTCTCTTGCACCCCAATCCCCCAATTTGTAATGGGTTCTCCTCAGTTGAAG TTGGCGCATTTTACCCGGGCGAAGAAGAGCCAGTGGAGATGGAGTCGGAGATCAGTAGGAGGATGCTGATGATGCAGAGGAGATACATAAGCTACGCAAC ACTGAAGAGGGATATAGTCCCTTGCGACAATCCAGGTGCTTCCTACTACGATTGTCATCATTCTCGACCGGCTAACACTTACAGCCGGGGTTGTGAGGTC ATCACCAGGTGCGCTAGAGATATCAAAGACTTTAACGATTGA
AA sequence Show only first row Show all	>Lus10016646 pacid=23143913 polypeptide=Lus10016646 locus=Lus10016646.g ID=Lus10016646.BGIv1.0 annot-version=v1.0 MLLKPFTFLQILFLSLILLHPNPPICNGFSSVEVGAFYPGEEEPVEMESEISRRMLMMQRRYISYATLKRDIVPCDNPGASYYDCHHSRPANTYSRGCEV ITRCARDIKDFND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13950		RALFL31	ralf-like 31 (.1)		Lus10016646 [exp]	0	1
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10014123 [exp]	1.0	0.9051
AT3G06145			unknown protein		Lus10004420 [exp]	1.4	0.9030
AT1G06980			unknown protein		Lus10025927 [exp]	9.3	0.8514
AT3G06145			unknown protein		Lus10034029 [exp]	14.7	0.8072
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10004230 [exp]	16.0	0.7781
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10040784 [exp]	18.7	0.8175
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10022725 [exp]	21.9	0.7865
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10041881 [exp]	22.4	0.8318
AT1G61667			Protein of unknown function, D...		Lus10007617 [exp]	26.1	0.7649
AT5G14510			ARM repeat superfamily protein...		Lus10002521 [exp]	30.7	0.7997

Compare expression of checked genes

Lus10016646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.