Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55940 263 / 2e-90 EMB2731 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1) AT5G51620 78 / 2e-19 Uncharacterised protein family (UPF0172) (.1), Uncharacterised protein family (UPF0172) (.2), Uncharacterised protein family (UPF0172) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032594 [exp] 298 / 3e-104 AT5G55940 305 / 5e-107 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1) Lus10043155 [exp] 297 / 6e-103 AT5G55940 303 / 2e-105 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370200 [exp] 270 / 5e-93 AT5G55940 283 / 5e-98 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1) Potri.001G370000 [exp] 268 / 3e-92 AT5G55940 282 / 1e-97 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF03665 [flax] [poplar] UPF0172 Uncharacterised protein family (UPF0172)
Representative CDS sequence Show only first row Show all	>Lus10016647 pacid=23143953 polypeptide=Lus10016647 locus=Lus10016647.g ID=Lus10016647.BGIv1.0 annot-version=v1.0 ATGGTCGACGGCGGGGAGCTGAAATATGAGATGTCTCAGAATGCCTACATCAAGCTCGTTCTCCACGCTCTCAAGCATAATACCTCAGCCGTCAACGGTG TCTTGCTCGGCCGGACTTCTCCTCTCAACGAAAACCTCGTTGAGATCGAAGATTCCGTTCCTCTCTTCCATAACCACCTCGGCCTCCTCCCTCCCCTCGA GATCTCCCTCATCATGATAGAGGAACACTATAGTGCACGAGGTCTTGCAATTGTTGGGTATTTCCACGCCAATGAGAGGTTTGAGGAGTCTGAGCTTGGT AACATGGCTAAGAACATTGCTGATCACATCTATCGCTATTTTCCTCAAGCAGCTCTTCTTTTGCTAGATAACAAGAAGCTTGAAGCATTACCAAAGGGGA AAGGTCGCAGCCCTGTTGTGCAGCTCTATACAAAGGATTCGTACAAGAACTGGAAGCTAGCTGGGCCAGATGGAAGCAGTAATTTGGTATTTAAGGAGCC AGCTGCAAATACCATATTACTAGACTACATATCATCTGAGAAGTGGCACGACGTGATGGATTTCGATGATCACCTTGACGATATAACAAAGGACTGGTTA AACCCAGATCTCTTCAAGTAA
AA sequence Show only first row Show all	>Lus10016647 pacid=23143953 polypeptide=Lus10016647 locus=Lus10016647.g ID=Lus10016647.BGIv1.0 annot-version=v1.0 MVDGGELKYEMSQNAYIKLVLHALKHNTSAVNGVLLGRTSPLNENLVEIEDSVPLFHNHLGLLPPLEISLIMIEEHYSARGLAIVGYFHANERFEESELG NMAKNIADHIYRYFPQAALLLLDNKKLEALPKGKGRSPVVQLYTKDSYKNWKLAGPDGSSNLVFKEPAANTILLDYISSEKWHDVMDFDDHLDDITKDWL NPDLFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10016647 [exp]	0	1
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	6.0	0.7012
AT5G28830			calcium-binding EF hand family...		Lus10015916 [exp]	15.4	0.7107
AT3G53810			Concanavalin A-like lectin pro...		Lus10004982 [exp]	20.5	0.6767
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10024396 [exp]	26.3	0.6446
AT4G25780			CAP (Cysteine-rich secretory p...		Lus10006981 [exp]	30.4	0.6777
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10021740 [exp]	42.8	0.6772
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	46.9	0.6813
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10017007 [exp]	53.4	0.6108
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10011660 [exp]	54.6	0.6573
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10018133 [exp]	74.2	0.6048

Compare expression of checked genes

Lus10016647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.