Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13220 1000 / 0 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT5G06530 526 / 3e-178 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 519 / 5e-175 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G31770 493 / 1e-166 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 467 / 3e-156 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT4G27420 458 / 3e-153 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G71960 420 / 3e-138 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT2G01320 247 / 1e-71 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT2G13610 217 / 3e-61 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G21090 214 / 6e-60 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022564 [exp] 1349 / 0 AT3G13220 1057 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Lus10015994 [exp] 517 / 3e-176 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10034775 [exp] 488 / 1e-164 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034387 [exp] 486 / 2e-163 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10035692 [exp] 480 / 1e-161 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 477 / 2e-161 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10025596 [exp] 471 / 6e-158 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10037283 [exp] 469 / 3e-157 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10025597 [exp] 462 / 1e-154 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370600 [exp] 1126 / 0 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Potri.011G094650 [exp] 843 / 0 AT3G13220 743 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Potri.016G065900 [exp] 556 / 0 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.006G199500 [exp] 510 / 7e-172 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.010G131900 [exp] 486 / 3e-163 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.004G236500 [exp] 484 / 3e-163 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 465 / 1e-155 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.001G404000 [exp] 445 / 2e-148 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 441 / 1e-146 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.019G083000 [exp] 419 / 9e-138 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10016649 pacid=23144003 polypeptide=Lus10016649 locus=Lus10016649.g ID=Lus10016649.BGIv1.0 annot-version=v1.0 ATGGAAGGAAACAGAGATGAGCAAATTGATGAGGACATGACATCCCCTCCAACAATGGGGTCCATGCAAATTGCAGGCAGCAATGGCTTCGCTCACAGCA TTGAGTTCATGTCTCAAGCTGCTTACCTTAGAAACAGGTATTCTGAGATTGACATTGAAGATGACAACACCCTTAGCCTCAGCAAGGATCAACCTCTTCC AATCTTCCTCAAGTTTGAGGATGTGGAGTACAAGGTTAGGAACAGCAGCCAAGGGGGAGGTTCTTCGAGGAATCCGGTGAAGGCGGTGGTGTCCAAGGTG GCATCACAGCTGAACTTGGAGCAAGACAACTACAAGCAAATACTTAAAGGGATAACAGGAAGCATCGGTCCAGGTGAGATCCTTGCTCTGATGGGTCCTT CTGGGAGTGGCAAAACAACCTTGTTGAAGATCATTGGAGGCAGACTTACTGACAATGTCAAAGGAAAAATTACTTACAATGACATTCCTTACAATTCTGC CCTCAGGAGAAGGGTTGGATTCGTGACTCAAGACGATGTTCTGCTTCCTCAACTAACTGTGGAGGAAACATTGGTGTTTGCTGCATTCTTAAGGCTCCCT GGGAATATGAGCCGCCAGCAGAAGTATGCCAGAGTTGAGATCATCATCAAGGATCTAGGTTTGGAGAGATGCCGGCACACGAGAATTGGGGGAGGATTCA TCAAAGGAATATCAGGAGGAGAAAGGAAGAGAACCAGCATTGGGCATGAGATCCTTGTTGATCCTTCATTGTTATTGCTTGATGAACCAACCTCGGGCCT CGACTCCACCTCAGCGAATCGCCTTCTCCAGATTCTACAAGGACTAGCTAAGGCAGGAAGGACAATTATCACAACGATCCATCAGCCATCCAGCAGAATC TTCCACACGTTTGATAAGATTCTGCTGATATCAGATGGATATCCAGTTTACAACGGCAGAGCTAGAGACTCGATGGAGTATTTCGCTTCGTTGAGGTTCA TGCCAGAGATAGCTATGAACCCAGCTGAGTTCATGCTTGATTTAGCAACTGGACAAGTCAATGACATTAGTGTGCCTCAGGATGTGTCCCCTCTCAGGGC TCAGAATTCTGAGAAGGAAGTTGTCAAATACCTGCAAGCAATGTACAAGACACAGCTGGAGCCGAAAGAGAAGGAAGAGAACCATCGAAACAACAAGGCG CCCGAGCATCTACAGATAGCGGTCCAAGTGAAGAAAGAGTGGACATCAAGTTGGTGGGAGCAATTCAGAATAATATACAAGAGAACATTCAAGGAAAGGT GTAGGGATTACTTTGACAAGCTGAGACTAGTCCAAGCTCTTGGAATTGCTGTCCTACTTGGCCTTCTCTGGTGGAAATCTCAAACTGGTACCGAGGCTCA GCTCAGGGATCAGATTGGTCTGATGTTCTACATATGTATATTCTGGACATCATCGTCAATATTTGGGGCGGTGTACGTGTTCCCGTTTGAGAAGATATAC ATAGTGAAGGAAAGGAAAGCAGACATGTACCCATTGAGTGTGTACTACGTATGTAGTACACTGTGTGACATGGTGGCTCATGTCTTCTACCCAACATTCT TCACTATCATTGTCTATTTCATGGCTGGTTTCAAGAGAACTGTACCTTGCTTCTTCTTGACTTTGCTTGCAATCCTTCTCATTGCCATAACTAGCCAAGG TGCAGGGGAGCTATTTGGGGCAGCAAGCTTGAGCATAAGAAGAGCAGGGATGTTTGCTTCTCTTGTATTAATGTTGTTTCTCCTCACTGGTGGCTACTAT GTCCAGCACATACCAAGGTTCATGCAATGGCTAAAGTACATGTCGTTTCTATACTACGGGTTTAGGCTGCTGCTGAAGGTGCAGTACGACGGGGACCAAA TGTACGAGTGCGAAAGCAGCGGAGGTTGCAGACCACTGCAGAGCTCCCCATCTTTCGACACAGTGAACCTCAAAGGTGGACTCCAAGAGGTTTGGGTGAT GTTGGCTATGGCTCTTGGATTCCGTTTGCTTGCCTACTTCTGCCTCCGCAAACGCATTGGAGCTTCCCACTTTTAG
AA sequence Show only first row Show all	>Lus10016649 pacid=23144003 polypeptide=Lus10016649 locus=Lus10016649.g ID=Lus10016649.BGIv1.0 annot-version=v1.0 MEGNRDEQIDEDMTSPPTMGSMQIAGSNGFAHSIEFMSQAAYLRNRYSEIDIEDDNTLSLSKDQPLPIFLKFEDVEYKVRNSSQGGGSSRNPVKAVVSKV ASQLNLEQDNYKQILKGITGSIGPGEILALMGPSGSGKTTLLKIIGGRLTDNVKGKITYNDIPYNSALRRRVGFVTQDDVLLPQLTVEETLVFAAFLRLP GNMSRQQKYARVEIIIKDLGLERCRHTRIGGGFIKGISGGERKRTSIGHEILVDPSLLLLDEPTSGLDSTSANRLLQILQGLAKAGRTIITTIHQPSSRI FHTFDKILLISDGYPVYNGRARDSMEYFASLRFMPEIAMNPAEFMLDLATGQVNDISVPQDVSPLRAQNSEKEVVKYLQAMYKTQLEPKEKEENHRNNKA PEHLQIAVQVKKEWTSSWWEQFRIIYKRTFKERCRDYFDKLRLVQALGIAVLLGLLWWKSQTGTEAQLRDQIGLMFYICIFWTSSSIFGAVYVFPFEKIY IVKERKADMYPLSVYYVCSTLCDMVAHVFYPTFFTIIVYFMAGFKRTVPCFFLTLLAILLIAITSQGAGELFGAASLSIRRAGMFASLVLMLFLLTGGYY VQHIPRFMQWLKYMSFLYYGFRLLLKVQYDGDQMYECESSGGCRPLQSSPSFDTVNLKGGLQEVWVMLAMALGFRLLAYFCLRKRIGASHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Lus10016649 [exp]	0	1
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Lus10015688 [exp]	3.5	0.8820
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10006037 [exp]	3.6	0.8831
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	8.1	0.8612
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10018055 [exp]	10.5	0.8777
AT1G50450			Saccharopine dehydrogenase (....		Lus10027349 [exp]	17.2	0.8632
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	18.0	0.8369
AT3G18500			DNAse I-like superfamily prote...		Lus10014775 [exp]	21.7	0.8382
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10031537 [exp]	23.1	0.8609
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10015007 [exp]	23.4	0.8054
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10033642 [exp]	24.1	0.8175

Compare expression of checked genes

Lus10016649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.