Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55960 843 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022565 [exp] 1042 / 0 AT5G55960 865 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370500 [exp] 924 / 0 AT5G55960 921 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01594 [flax] [poplar] AI-2E_transport AI-2E family transporter
Representative CDS sequence Show only first row Show all	>Lus10016650 pacid=23143938 polypeptide=Lus10016650 locus=Lus10016650.g ID=Lus10016650.BGIv1.0 annot-version=v1.0 ATGGAGTTGGTTCCATACGCCGACCCTGATTCCAGGCCAGCGCCGCCGATGCCGGAGTCTTCTCCACCACCGTCATCGTCTTCTTCTCCTCTGCCGTGGC AGGACATGTTCAGATCCGCTTCATTCAACAAACCTTCCACGTCGGCGGCACCACCTCCTCTGTCTTCTGCTAAGCCTCCTACTCCACCTGGGTCCTCCAA ATCCGGCGACCCAGCTCATAAAGACAGCTTCTTGGGAGATCCACAGGTACGCCTCGCTGTCTGCATAGCCATGGCCCACGCCGGCCTCGCCTTCACAATC TTCGTCCTATATTTCGTCTGTAAGCTCCTTCAGGAGTACCTGCGCCCAATCCAGTGGGCGATTCTGTGCTCCATTCCCTTGAGGGGAATTCAAGAGGCCC TTGTCTCCTTTTGGAATGAGCCTCTCAAGTTAGGGCTTACAGAGACTATCCTCGCCATCCCCAGTGCTATCCTCGAGGTGTTCGTCGGCACCCTTGTTGA CATCAAGGAACTCTGTCTTAGGGTTTTGCTCAGGAAGGACAAGAAGGACCGAATCAAGAGGAATCGAAGTGGATTTTCCAAGTTAGTAAGGTGGTTAGTC TCGTTTGGCGTGTTTGTGATTGCTTATGAGAATATTGGTGCGACGGGGGCACTTTCCATTTTAGTTTTAGGGTTTTTGTGCAGTACCAAGACTGTGGATT CCACTTTCTCTGCTGTAACCTCGTTTAGGAGTAACAGCTTTAAGCGCAGTGTTATCAGTGCATTCTTTACTAAGGGGATATTGAAGCGACTCAAGACCAT CATTGCAGTTGGCTTGATCATCGGTATGATTGTTGGCTTCTTGCTTGGATTAATATTCTTCTCCTACAAGATCGGTGTCGAAGGCAAAGACGCTGTGATC TCTTTGAAATCGCACGTGGAAGAGAGCAATTATGCGGAGAAGTTTGGGGTTAGGAAGTGGATGGACGATAATGATGTGCCTGGGATGGTTGATAGGTACA CAACTAAGTTCTACGAGACTGTTTCTGAACACATAGATAGTCTTGCAATGCAGTACAATGTGACTGAATTAGTCACCGGGATCAAGCATTTCATCATTAG TCCTCCTCCAGCCAACTCGTCTGAGCAATCGGCAGTTATAATGAGCCCGACTCGATACACGAAGAGGCTAGTGACTTTGCGAAAAAAGTTGACTGACCGG CAATGGGGGGGTATCTACACAGAACTGGATGCAATTGTCAGGGAGCTGATAATCAGCCGCGAGGATATACTTGAGAAGGCAAAGGCGTTTGCTCTTCGGG GGATGGATGTGTCCCAACGCGTATTTGCGAGCAGTGCATCAGTGCTAGGTGGTGGAGCTAAACTGATGTTGTCCATTGGGAACTCTATCATATCTGGAGC AGCTGAAGTTTTCAACTTTGTGTCCATGTCAATGGTATTCTTCTGGGTATTGTATTACCTGATAACATCAGAGTCTGGTGGGGTGACCGAGCAGATGATG TGCATGCTGCCAATGAGGAAATCAGTGAGGAATAGATGCGTAGAGGTACTTGACAAAGCCATTTCAGGAGTTCTTCTGGCGACAGCTGAGCTTGCATTCT TCCAAGGATGCATAACGTGGCTCTTGTTTAGACTCTACAAAATCCACTTCCTATACGTATCTACAGTTCTTGCATTCATCAGTCCGCTATTACCAATATT CCCACCATGGTTTTCCACAATTCCAGCAGCGGTGCAGCTGGTGCTTGAAAGCAGATACATTCTAGCTATTAGCCTCTCTGTAATTCATCTTCTGCTGATT GATTATGGTGCATCTGAAATTCAAGAGGATATACCGGGTCACAACGAATACCTCACGGGGCTTAGCATCATTGGTGGGATGACATTGTTTCCATCAGCAG TCGAGGGAGCGATAATGGGTCCATTGATAACGACAGTTGTGATAGGCCTAAAGGATTTGTATGTAGAATTTGTGCTAGAAGAGCCGAAGAAGAAAAGTAA GGATTAA
AA sequence Show only first row Show all	>Lus10016650 pacid=23143938 polypeptide=Lus10016650 locus=Lus10016650.g ID=Lus10016650.BGIv1.0 annot-version=v1.0 MELVPYADPDSRPAPPMPESSPPPSSSSSPLPWQDMFRSASFNKPSTSAAPPPLSSAKPPTPPGSSKSGDPAHKDSFLGDPQVRLAVCIAMAHAGLAFTI FVLYFVCKLLQEYLRPIQWAILCSIPLRGIQEALVSFWNEPLKLGLTETILAIPSAILEVFVGTLVDIKELCLRVLLRKDKKDRIKRNRSGFSKLVRWLV SFGVFVIAYENIGATGALSILVLGFLCSTKTVDSTFSAVTSFRSNSFKRSVISAFFTKGILKRLKTIIAVGLIIGMIVGFLLGLIFFSYKIGVEGKDAVI SLKSHVEESNYAEKFGVRKWMDDNDVPGMVDRYTTKFYETVSEHIDSLAMQYNVTELVTGIKHFIISPPPANSSEQSAVIMSPTRYTKRLVTLRKKLTDR QWGGIYTELDAIVRELIISREDILEKAKAFALRGMDVSQRVFASSASVLGGGAKLMLSIGNSIISGAAEVFNFVSMSMVFFWVLYYLITSESGGVTEQMM CMLPMRKSVRNRCVEVLDKAISGVLLATAELAFFQGCITWLLFRLYKIHFLYVSTVLAFISPLLPIFPPWFSTIPAAVQLVLESRYILAISLSVIHLLLI DYGASEIQEDIPGHNEYLTGLSIIGGMTLFPSAVEGAIMGPLITTVVIGLKDLYVEFVLEEPKKKSKD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55960			unknown protein		Lus10016650 [exp]	0	1
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020829 [exp]	2.8	0.8058
AT5G55960			unknown protein		Lus10022565 [exp]	5.3	0.7980
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	6.2	0.8027
AT1G70280			NHL domain-containing protein ...		Lus10039484 [exp]	8.4	0.7978
AT2G17550			unknown protein		Lus10016693 [exp]	9.8	0.7915
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	11.7	0.7941
AT3G50120			Plant protein of unknown funct...		Lus10011501 [exp]	12.0	0.7991
AT1G69690	TCP	AtTCP15, TCP15	TEOSINTE BRANCHED1/CYCLOIDEA/P...		Lus10037190 [exp]	12.2	0.7698
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10000322 [exp]	12.7	0.7938
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10012506 [exp]	13.0	0.7788

Compare expression of checked genes

Lus10016650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.