Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13200 280 / 4e-96 EMB2769 EMBRYO DEFECTIVE 2769, Cwf15 / Cwc15 cell cycle control family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022566 [exp] 344 / 2e-121 AT3G13200 307 / 1e-106 EMBRYO DEFECTIVE 2769, Cwf15 / Cwc15 cell cycle control family protein (.1) Lus10018143 [exp] 84 / 1e-20 AT3G13200 72 / 2e-16 EMBRYO DEFECTIVE 2769, Cwf15 / Cwc15 cell cycle control family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370366 [exp] 300 / 4e-104 AT3G13200 247 / 6e-83 EMBRYO DEFECTIVE 2769, Cwf15 / Cwc15 cell cycle control family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04889 [flax] [poplar] Cwf_Cwc_15 Cwf15/Cwc15 cell cycle control protein
Representative CDS sequence Show only first row Show all	>Lus10016651 pacid=23143984 polypeptide=Lus10016651 locus=Lus10016651.g ID=Lus10016651.BGIv1.0 annot-version=v1.0 ATGACGACTGCAGCTCGACCAACTTGGGCCCCTGCCAAAGGTGGTAATGAACAAGGTGGTTCTCGAATTTTTGGTGCATCGCAGAAGTTTTCATCAAGGG ACCTTGCTGCACATACAACTCTCAAGCCAAGGAGGGAAGGCCAAGATACTCAGGATGAACTGGAGAAACGGAACCTCCGTGAGGAGCTTGAAGAACGTGA AAGAAGGCATTTCTCATCGAAGGACAAGTCATACAATGATGACAGAGACCGTAGTAGAAGGGGCAGCCAGCTTCTCCTGGAAGGTTCGAAAAGAGATGCA GAAGAACGTATAATTCCTCGCAGTGTTGATGCTGATGATTCTGATGGCGAGATAAACAACAGCGATGAAAGTGATGATGAAGACGATGACGATGAAGACG ACACCGAAGCTTTGTTGGCTGAGCTGGAGAGGATAAAGAAGGAAAGAGCAGAAGAAAAGCTCCGCCAGGAGCAAGAACGTGCAGTTGAGGAGCTGAAAGT TAAAGAAGAACAGCTTCTCCGTGGAAACCCATTGATGAACAGCAACCCAACATCCTTCGGTGTGAAGAGGAGGTGGGATGATGATGTGGTTTTCAAAAAC CAGACAAGGGGTGAAACCAAAACACCAAAACGTTTCATCAACGACACCATCAGGAATGATTTCCATCGCAGATTCTTGCACAAGTACATGAAATAG
AA sequence Show only first row Show all	>Lus10016651 pacid=23143984 polypeptide=Lus10016651 locus=Lus10016651.g ID=Lus10016651.BGIv1.0 annot-version=v1.0 MTTAARPTWAPAKGGNEQGGSRIFGASQKFSSRDLAAHTTLKPRREGQDTQDELEKRNLREELEERERRHFSSKDKSYNDDRDRSRRGSQLLLEGSKRDA EERIIPRSVDADDSDGEINNSDESDDEDDDDEDDTEALLAELERIKKERAEEKLRQEQERAVEELKVKEEQLLRGNPLMNSNPTSFGVKRRWDDDVVFKN QTRGETKTPKRFINDTIRNDFHRRFLHKYMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10016651 [exp]	0	1
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	1.4	0.9639
AT1G49590			C2H2 and C2HC zinc fingers sup...		Lus10027913 [exp]	2.2	0.9463
AT5G08560			transducin family protein / WD...		Lus10001045 [exp]	2.4	0.9558
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	3.5	0.9330
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10035966 [exp]	4.2	0.9446
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	4.7	0.9344
AT3G52220			unknown protein		Lus10038762 [exp]	4.9	0.9506
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	6.7	0.9533
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10016798 [exp]	7.9	0.9285
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	8.1	0.9271

Compare expression of checked genes

Lus10016651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.