Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55970 344 / 2e-117 RING/U-box superfamily protein (.1.2) AT4G26580 327 / 1e-110 RING/U-box superfamily protein (.1.2) AT1G80400 105 / 5e-25 RING/U-box superfamily protein (.1) AT4G32600 105 / 9e-25 RING/U-box superfamily protein (.1) AT1G68070 58 / 3e-09 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G15590 55 / 7e-09 unknown protein AT3G61180 53 / 2e-07 RING/U-box superfamily protein (.1) AT2G01735 44 / 0.0001 RIE1 RING-finger protein for embryogenesis (.1) AT4G11680 42 / 0.0006 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022567 [exp] 476 / 1e-168 AT5G55970 418 / 1e-146 RING/U-box superfamily protein (.1.2) Lus10011475 [exp] 123 / 2e-31 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10023112 [exp] 105 / 5e-25 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1) Lus10013144 [exp] 102 / 6e-24 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10008106 [exp] 81 / 2e-16 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10017750 [exp] 74 / 2e-14 AT4G32600 192 / 1e-57 RING/U-box superfamily protein (.1) Lus10033075 [exp] 73 / 4e-14 AT4G32600 189 / 2e-56 RING/U-box superfamily protein (.1) Lus10041359 [exp] 56 / 3e-08 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 51 / 9e-07 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G371200 [exp] 377 / 3e-130 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 357 / 3e-122 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.006G247000 [exp] 110 / 1e-26 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 106 / 3e-25 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.014G075000 [exp] 58 / 3e-09 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.008G134900 [exp] 51 / 6e-07 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.002G155200 [exp] 44 / 0.0001 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.010G106300 [exp] 44 / 0.0002 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016652 pacid=23143987 polypeptide=Lus10016652 locus=Lus10016652.g ID=Lus10016652.BGIv1.0 annot-version=v1.0 ATGAACATGAGGTACCCATTTCCAGCACAGTCGTCATTTTGTCCCTCAGGTTCTCTATCCCCAAATTCTGAAGCTGGAGAAGATGTAGTACCCTCGGTTT TAAGCGTCAGAAACAGCAGGCCTACTGCACAATATTCCCCTCTTTCGTCCTTGTTGATACGAGCAGCAATGAGGATTTCCAGAGCCAGATGGTTCACCTT TTTAAGAAGAGTTTTCCACTACCAGAATGGCTCAAGCTCTGATCTTGGCTCCAACCCTTTCAATTCCTGGACTTGGATGGTGTTGGAGCTCATAGCTTTG GTCATTCAGCTCATTGTCAGTGGTTTCACTCTAGCAGTTTCTAAAACTGAGAAACCTGTTTGGCCCATGAGGATTTGGATCCTTGGTTATGACATTGGTT GTGTCCTCAGCCTGCTACTACTCTACGGCCGATACAGGCAACTTTTTGGCTCTCAGGGACAAGGATTCCCGCTTCCGGATCTGGAGCAGCAGAGACTTCA CAGTGAGGATTCCAGGTGCTCCCACCTGATGAACAAATGCAGGACTTCACTTGAACTGTTCTTTGCAATCTGGTTTGTGATGGGGAACGTTTGGATCTTT GACTCGCGATTAGGATCGATCAACCGAGCTCCTAAGCTCAATGTGCTATGTGTCTCCCTTCTCACCTGGAATGCAATCTGCTATTCGTTCCCATTCCTAT TGTTTCTTCTTCTGTGTTGTTGTGTCCCTTTCATCAGTAGCTTTCTCGGTTACAACATGAATATGGGCTCAGCAGACAAAGCTGCATCAGATGATCAAAT CTCCAGCCTTCCAAGTTGGCAGTACAAAGCAGTCGACACGTCCAACATGCTGGACGATGGTGATGATCAAGAATCAAGTTTGGCTCCGGCAAGCGAAGAT AGGAAGCACGGCGATGTTCTCTGTATAGCAATGTTTTACAATTTACACAACGTAGAACATGGCAAAGCTTCTCCTTGTACATTGGGTGTAAGCTGTGGGG TGAGAGGCTGCCAAACAGCTTACAGAGAGACAAGTTTGAAGAGCTTTGCTCATTTCTGTTACCGTCTAGTCTCCACGATTCACATTCGAATTAGTTCACA AGATTCTGAACAAGGGGTTGCACTGGATTGA
AA sequence Show only first row Show all	>Lus10016652 pacid=23143987 polypeptide=Lus10016652 locus=Lus10016652.g ID=Lus10016652.BGIv1.0 annot-version=v1.0 MNMRYPFPAQSSFCPSGSLSPNSEAGEDVVPSVLSVRNSRPTAQYSPLSSLLIRAAMRISRARWFTFLRRVFHYQNGSSSDLGSNPFNSWTWMVLELIAL VIQLIVSGFTLAVSKTEKPVWPMRIWILGYDIGCVLSLLLLYGRYRQLFGSQGQGFPLPDLEQQRLHSEDSRCSHLMNKCRTSLELFFAIWFVMGNVWIF DSRLGSINRAPKLNVLCVSLLTWNAICYSFPFLLFLLLCCCVPFISSFLGYNMNMGSADKAASDDQISSLPSWQYKAVDTSNMLDDGDDQESSLAPASED RKHGDVLCIAMFYNLHNVEHGKASPCTLGVSCGVRGCQTAYRETSLKSFAHFCYRLVSTIHIRISSQDSEQGVALD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	1.4	0.9835
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10007296 [exp]	2.0	0.9834
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	3.2	0.9769
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	3.5	0.9812
AT1G13635			DNA glycosylase superfamily pr...		Lus10019198 [exp]	4.5	0.9806
AT1G29890		RWA4	REDUCED WALL ACETYLATION 4, O-...		Lus10000367 [exp]	4.9	0.9751
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	5.3	0.9745
AT5G47530			Auxin-responsive family protei...		Lus10002274 [exp]	5.8	0.9525
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	6.3	0.9730
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10022242 [exp]	6.9	0.9693

Compare expression of checked genes

Lus10016652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.