Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23910 320 / 8e-106 unknown protein AT3G24255 296 / 1e-96 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022568 [exp] 803 / 0 AT3G23910 336 / 4e-112 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G317900 [exp] 426 / 4e-147 AT3G23910 380 / 2e-129 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016653 pacid=23143995 polypeptide=Lus10016653 locus=Lus10016653.g ID=Lus10016653.BGIv1.0 annot-version=v1.0 ATGCACGCAGAGATGAAGGTGGTCACTTCTTCCTCCGACGCGGAGCCTCTCGATCTCGAAGCAATTCGTAGTCGGATTACTGAGCTCGAAGAAGTTTACA CGAGCTGCAATGATGACGACATGGTCACTTCCGATGCGGACGAGTTAATCAGAGATTGCGCCATTCAACTGGAGAATAAAGTCGACCAGATTATGGCGGA TTTCACCGACGTCAGTTTCTTGGGGATTGAAGATTTAGATTTGTACTTGGAGCACTTGAAAGACGAGCTGAGTGCGGCGGAGTCTGAGAGTGCTAAGATC TCTACTGAAATTGAACTTCTCAATACAACCAATCTCCAAGATTCCAGTGGACTAGAGAAGGAGCTTGAAGAGTTGAAGTATTCATTAGACCGTATTTCCT CAGAGGACTCACCCCTAGGAAACGATGGTCCACAGGATGCTTGCTCATCGAATGGAGATGGGCAATTAAATTCATTACACGCACCTTATGATGACGAGTT TGAGATTTTGAAGCTTGAAAATCAGATTGAGGAAAACAAGATAAACTTGAAGTCCTTGCAGGATCTAGACTCTTCATTCAAGAGGTTTGATGCCTTGGAA CAAATTGAAAAGGCATTGTCAGGTCTAGAAGTCACTGAAGTTGATGGAACCTGCATTAAATTTTCAGTGAAGACGTATACTCCAAACTTGGGAGATATTT TATGCCAACAAAATATTGAAGGTACTGGTGAGCTGTCTGAAGTACACCATGAATTTCTCATAGAAGTTTCCAACGAGACAATGGGACTTAAGAAGGTTGA GATGTTTCCAAATGATGTATTCATTGGTGATGTCGTAGATGCTGCCAATTCGTTCAGGCAGTTGTTTGCAAATGATACACTTTCGGAGACAAGGTCCTCA CTGCAATGGTTTATACTGAAGGTGCAAGATAAAATAAGGGACTGCAATTTAAGAAGACGTGTGACGAAAAGTGCAAGCAAGTCGAGGCATTCCTTTGAAT ACTTGGATAAAGATGAAACCATAAAAGCTCAGTTGAGTGGAGTTGATGCTTTGATAAAAGTACCCCCTGGATGGCCTTTAACAAATTCACCATTGAAATT GATGTCCCTCAAGAGCTTGAATCAGCAGAAGGAAGTCTCCTTAAGCTCTCTTTGCAAGATCGAGGAAACAGCAAATTCCCTGGATGCACAAATTCGACAT CAATTGCTAAGCTTTGCAGATGAAATTGAGAAGGTGGTACTGGAGGAAATGCGCCTGGAAATCCACTGTGGCAATGGCTCTTACTCAAACAGTTGA
AA sequence Show only first row Show all	>Lus10016653 pacid=23143995 polypeptide=Lus10016653 locus=Lus10016653.g ID=Lus10016653.BGIv1.0 annot-version=v1.0 MHAEMKVVTSSSDAEPLDLEAIRSRITELEEVYTSCNDDDMVTSDADELIRDCAIQLENKVDQIMADFTDVSFLGIEDLDLYLEHLKDELSAAESESAKI STEIELLNTTNLQDSSGLEKELEELKYSLDRISSEDSPLGNDGPQDACSSNGDGQLNSLHAPYDDEFEILKLENQIEENKINLKSLQDLDSSFKRFDALE QIEKALSGLEVTEVDGTCIKFSVKTYTPNLGDILCQQNIEGTGELSEVHHEFLIEVSNETMGLKKVEMFPNDVFIGDVVDAANSFRQLFANDTLSETRSS LQWFILKVQDKIRDCNLRRRVTKSASKSRHSFEYLDKDETIKAQLSGVDALIKVPPGWPLTNSPLKLMSLKSLNQQKEVSLSSLCKIEETANSLDAQIRH QLLSFADEIEKVVLEEMRLEIHCGNGSYSNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23910			unknown protein		Lus10016653 [exp]	0	1
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Lus10005123 [exp]	2.0	0.7154
AT2G34040			Apoptosis inhibitory protein 5...		Lus10025428 [exp]	6.9	0.7158
AT3G23910			unknown protein		Lus10022568 [exp]	9.6	0.7136
					Lus10026307 [exp]	16.0	0.6591
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10019611 [exp]	29.2	0.6290
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10015115 [exp]	30.7	0.6554
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	31.9	0.6604
AT1G18070			Translation elongation factor ...		Lus10018000 [exp]	33.7	0.6054
AT1G75980			Single hybrid motif superfamil...		Lus10005613 [exp]	40.5	0.5583
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	53.1	0.6108

Compare expression of checked genes

Lus10016653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.