Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32810 1284 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT2G28470 934 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 877 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G36360 868 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G52840 772 / 0 BGAL2 beta-galactosidase 2 (.1) AT4G26140 758 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT1G45130 745 / 0 BGAL5 beta-galactosidase 5 (.1) AT5G56870 742 / 0 BGAL4 beta-galactosidase 4 (.1) AT5G20710 731 / 0 BGAL7 beta-galactosidase 7 (.1) AT5G63810 727 / 0 BGAL10 beta-galactosidase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015625 [exp] 894 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 893 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 879 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10041798 [exp] 845 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 833 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 809 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10022645 [exp] 799 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10006733 [exp] 788 / 0 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10003343 [exp] 787 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057900 [exp] 1395 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.009G012400 [exp] 931 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.006G144500 [exp] 884 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 867 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 867 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 866 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 862 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.011G044300 [exp] 845 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 826 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.001G025800 [exp] 777 / 0 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10016655 pacid=23144014 polypeptide=Lus10016655 locus=Lus10016655.g ID=Lus10016655.BGIv1.0 annot-version=v1.0 ATGGTTGCAAGTAGACGACCACCATTGCTCCTCGTCTTTTGCTTCACCTCATTGCTTTACTTGGCAACTGTTGTATCTGCCAACTTCTTCCAGCCTTTCA ACGTCACCTATGACCACCGAGCTATCATCATCGGCGGCAAGCGCCGGATGCTCATTTCCGCCGGAATCCACTACCCTCGCGCCACTCCTCAAATGTGGCC TGATCTGATTGCTAAGAGCAAGGAAGGCGGCGCAGACGTAATCCAGACCTATGTGTTTTGGGGCGGTCATGAGCCTGTTAAAGGACAGTATAACTTCGAA GGAAATTTCGATCTCGTAAAGTTTGTGAAGCTAGTAGGAGCTAGTGGACTCTACTTTCATCTTCGCATTGGTCCTTATGTCTGCGCTGAGTGGAATTTTG GGGGTTTCCCCGTGTGGTTACGTGACATCCCAGGCATAAAGTTCCGAACAGATAATGCTCCATTCAAGGAAGAAATGCAGCGGTTTGTTACCATGATAGT GGATCTCATGAGAGACGAACAGCTGTTCTCTTGGCAAGGTGGCCCAATCATCATGTTGCAGATAGAAAATGAATATGGGAATATCGAAAGCTCTTTCGGC CCCGGAGGCAAGAGATATATGCAATGGGCTGCAAATATGGCTTTGGGACTTGGTGCTGGTGTTCCATGGGTGATGTGCAAGCAAACTGATGCTCCCGAAA ATATTATAGATGCATGTAATGATTACTACTGCGATGGTTTTAAACCCAATTCCCCTAACAAGCCAGTTCTCTGGACAGAGAATTGGGATGGCTGGTACAC AGAATGGGGTGAGGGTCTTCCACATCGACCAGTTGAAGACCTTGCTTTCGCAGTTGCTCGCTTTTTCCAACGTGGAGGAAGCTTTCAAAATTATTATATG TATTTTGGTGGAACGAACTTTGGCCGGACTTCGGGGGGGCCTTTCTATATAACCAGCTATGATTATGACGCTCCACTAGATGAATATGGTCTTCTAAGAG AGCCCAAATGGGGCCATTTGAAAGATCTCCACGCAGCTATAAAGCTTTGTGAACCTGCTTTAACCGCTACAGATTCTCCTCAGTACATAAACTGGGGTTC ATGGCGGCAGGAGGCACATGTTTATGAAAATCAAAGCAGGTGCTCGGCATTTATTGCAAATATCGATGAACACAAAACAGTAACTGTTTCGTTCCGGGGT CAGTCTTATGTTTTACCACCATGGTCAGTGAGTATACTACCAGACTGCAAGAATGTTGTGTTCAACACCGCGAAGGTCACAGCACAAACTTCTATAAAAA ACGTGGAGTTTGCTTTGCCTCTAGCTTCAGGCCCCAGTCCTCGGCAGTTTGCAGCCAAGAGGGGAGGGTCGCTTAAGTCAGGGTCGTGGTTGGTTGTGAA AGAGCCAATTACTATCTGGAGCGAGAAAAATTTCACCACTAAAGGCATTCTGGAGCACCTAAACGTGACAAAGGACCAATCTGACTATCTGTGGTATTTC ACTAGACTTTATGTTTCAGATGATGATGTTGCATTTTGGGAAGCAAACCAAACCAGTCCGGCCATAATAATTGATAGTATGCGTGATGTGTTACGGATAT TCGTCAATGGGCAGCTTACTGGCAGCACTACCGGTAAGTGGGTCAAGGTGTCCCAGCCAGTGAAGCTTCAGAAAGGATACAATGATATAGTGCTTTTGTC TCAGACGATGGGTTTGCAGAATTATGGTGCTTTCTTAGAGAGGGATGGAGCAGGATTTAGAGGCCAAACTAAGATTACTGGATTTAAAGATGGAGATATA GACCTCTCAAGCTTGTTCTGGACTTACCAGATTGGGCTCAAAGGGGAGTTCTCGAAACTATACTTAAAAGAGAGCAATGACGAAACAGAATGGAGTGATT TGATGCCTAATGCAAGTCCATCGACTTTCACCTGGTACAAGACATACTTTGACGCACCAGCTGGGACTGATCCAGTTGCACTTGATTTGGGAAGTATGGG AAAGGGTCAGGCATGGGTCAACGGCCACCACATTGGAAGATACTGGACCATTGTTTCTCCGAAAAACGGATGCCAACCCTGCAATTACGCTGGAGCATAC AGACCAGAGAAATGTAGAACAAATTGCGGGAATCCTACTCAGACCTGGTACCATGTCCCACGCTCATGGCTCGAAGAATCAAACAACTCAGTTGTACTGT TTGAGGAAACAGGAGGTAATCCTTTTGGGGTTACAGTCAATGTACGTTCATCTCCAACAGTTTGCGGAAGCGTCTCTGAATCAGACTATCCTCCTGTCAC AAAGTGGTCGGGTCCTAGTTCAATCGATGGACGCTTGTCAATCACGGACACAGCACCAGAAGTGCACATACGGTGTAAAGAAGGTTACACAATCTCGTCC ATAGAATTCGCTAGCTACGGGACACCAAAGGGAAGCTGCCAGAAGTTTGCACAAGGCAACTGCCATGCAGTTGACTCCTTTTCCTTGGTATCCAAGGCTT GCCAGGGGCGAAACGAGTGCCACATTGCGGTTTCTAATGATGTGTTTGGTGATCCGTGCCCGAAGGTTATCAAGACGTTGGCTGTTGAAGCAAGATGTTC ATCATCGTCATCGTCATCTTCTGCTTCCGTGGCTGAGATGTAG
AA sequence Show only first row Show all	>Lus10016655 pacid=23144014 polypeptide=Lus10016655 locus=Lus10016655.g ID=Lus10016655.BGIv1.0 annot-version=v1.0 MVASRRPPLLLVFCFTSLLYLATVVSANFFQPFNVTYDHRAIIIGGKRRMLISAGIHYPRATPQMWPDLIAKSKEGGADVIQTYVFWGGHEPVKGQYNFE GNFDLVKFVKLVGASGLYFHLRIGPYVCAEWNFGGFPVWLRDIPGIKFRTDNAPFKEEMQRFVTMIVDLMRDEQLFSWQGGPIIMLQIENEYGNIESSFG PGGKRYMQWAANMALGLGAGVPWVMCKQTDAPENIIDACNDYYCDGFKPNSPNKPVLWTENWDGWYTEWGEGLPHRPVEDLAFAVARFFQRGGSFQNYYM YFGGTNFGRTSGGPFYITSYDYDAPLDEYGLLREPKWGHLKDLHAAIKLCEPALTATDSPQYINWGSWRQEAHVYENQSRCSAFIANIDEHKTVTVSFRG QSYVLPPWSVSILPDCKNVVFNTAKVTAQTSIKNVEFALPLASGPSPRQFAAKRGGSLKSGSWLVVKEPITIWSEKNFTTKGILEHLNVTKDQSDYLWYF TRLYVSDDDVAFWEANQTSPAIIIDSMRDVLRIFVNGQLTGSTTGKWVKVSQPVKLQKGYNDIVLLSQTMGLQNYGAFLERDGAGFRGQTKITGFKDGDI DLSSLFWTYQIGLKGEFSKLYLKESNDETEWSDLMPNASPSTFTWYKTYFDAPAGTDPVALDLGSMGKGQAWVNGHHIGRYWTIVSPKNGCQPCNYAGAY RPEKCRTNCGNPTQTWYHVPRSWLEESNNSVVLFEETGGNPFGVTVNVRSSPTVCGSVSESDYPPVTKWSGPSSIDGRLSITDTAPEVHIRCKEGYTISS IEFASYGTPKGSCQKFAQGNCHAVDSFSLVSKACQGRNECHIAVSNDVFGDPCPKVIKTLAVEARCSSSSSSSSASVAEM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	0	1
AT3G24120	GARP		Homeodomain-like superfamily p...		Lus10039123 [exp]	2.6	0.8249
AT2G43120			RmlC-like cupins superfamily p...		Lus10019561 [exp]	2.8	0.8707
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	3.5	0.8464
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10002950 [exp]	4.2	0.8436
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	4.7	0.8673
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	5.5	0.8462
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	6.9	0.8134
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	9.0	0.8201
AT2G27500			Glycosyl hydrolase superfamily...		Lus10020618 [exp]	11.9	0.7620
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	13.0	0.8069

Compare expression of checked genes

Lus10016655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.