Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31740 856 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04610 119 / 2e-28 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G60910 95 / 2e-21 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G17365 94 / 4e-21 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G34360 79 / 4e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003963 [exp] 110 / 3e-25 AT5G04610 374 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023784 [exp] 107 / 2e-24 AT5G04610 389 / 2e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019750 [exp] 92 / 3e-20 AT3G60910 394 / 3e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016376 [exp] 81 / 2e-16 AT3G60910 327 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G317700 [exp] 977 / 0 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G261000 [exp] 103 / 2e-24 AT3G60910 387 / 2e-137 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G055600 [exp] 95 / 4e-21 AT3G60910 378 / 1e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G234600 [exp] 94 / 8e-20 AT5G04610 397 / 1e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G153200 [exp] 74 / 2e-14 AT3G17365 313 / 1e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.004G150200 [exp] 74 / 4e-14 AT4G34360 385 / 1e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10016656 pacid=23143968 polypeptide=Lus10016656 locus=Lus10016656.g ID=Lus10016656.BGIv1.0 annot-version=v1.0 ATGGGAAAGAAGGGCAAGCAACCGTCACGGTCACAGCCGTCCTCCGCCGATGACCTGCCGTCCTCCGCCGATGACCTCCTTACCACTCTAGGAGACTTCA CCAGCAAGGAAAACTGGGACAAGTTCTTCACCATCCGCGGTGCCAATGATTCCTTCGAGTGGTACGCCGAGTGGCCGCAGCTCAGCCAACCTCTGCTCTC TCTCTTGTCCGCCGCCCCTTCCTCGCCGGAGATTCTCGTGCCTGGTTGCGGGAATTCGCGGCTGTCGGAGCACTTGTACGATGCCGGTCTGAAGAGCATT ACGAATGTTGATTTCTCCAAAGTTGTCATTTCTGATATGCTGAAGAGGAATGTGAGGGAGCGGCCTGGAATGAAGTGGCGAGTCATGGACATTACGAGTA TGCGGTTTGAGGACGAGACATTTGATGCTGTGCTTGATAAAGGTGGATTGGATGCTTTGATGGAGCCGGAAATGGGTTCTAATCTGGGAAACCAGTATTT GTCTGAGGTTCGAAGGGTTTTGAAACCAGGGGGCAAGTTTATATGCCTTACATTGGCAGAATCTCATGTGCTAGGTCTGCTATTCCCCAAGTTCCGCTTC GGGTGGAAAATGGCTGTTCATTCTATTCCACAGAAGCCATCTAAAAAGCCTAGCTTAGTTACTTTTATGGTGGTTGCTGAGAAAGACAATTACCCGACTG TTCTGTCACCTATAACGTCATCATTAAGAACGTCTGTTGACTGTAGTGGAAATCAGGCTGCGGGTCTCTTTGAAGCCCTTGAACGAGAGAATCAAATTCG ACAAGAACATTTAAGTGGGTCTGATATACTCTACTCTCTCGAAGATCTCCAACTGGGAGCCAAAGGCGACATGATGAAACTTAACAAAGGTCGCAGATGT CTGGTTACATTAGGTGGGGAAGGGAACTCCCGTTTCAGTTACAAAGCCATTCTTCTTGATGCTAAGGAGAACTCTGGCCCGTTTTCATACCATTGTGGAG TTTTTATTGTGCCAAAGGCTCGAGCTCATGAATGGCTCTTTTCTTCAGAAGAAGGACAATGGCTGGTTGTTGAAAGCGCAAAAGCAGGTCGTCTAATCAT GGTTATACTGGACAGTAGCCATTCCAATGCCAGCATGGATGACATTCAGAGCGATTTATCTCCTCTAGTAAAAAAGTTGGCACCTGGAGTTGGGGATGAT GTGGGAGGGCAAATTCCTTTCATGATGGCTGGTGATGGAATTAAGCAACGGAATAATGTTCATCAGGTGACGTCACCATTGACAGGGCCAGTAATTGTTG AAGATGTGGTCTATGAAAATTTTGACGGGGACGCTGGTATTCTCTTTCCATCTAGAGATTTGGTATTCCGCCGTCTTGTCTTTCAGAGAACTGAAAACCT GGTGCAGTCTGAAGCGCTTCTTTCAACAAACGAAGCACAAAAAGGTGATCAAGGCGAAAGGAGGATATCTAATTCATCTTCCAAGTCGAAAAAGAAACAG GACCTAAAACAAAAAGATGAATCAAGCAGCCTGCTTCAGGTTTATCATGATTATCTGGCTAGTTCGTATCATTTGGGGATCATCTCTGGTTTTGTTTTGA TTACTTCATATTTAGAAAACATGGCCTCAGCTGGGAAAAAGGTTAATGCAGTTGTCATAGGTCTTGGGGCAGGTCTGCTTCCTCTTTTTCTACATCGGTC TATACCGTTTCTGCACTGTGAGGTGGTGGAGCTAGATCCTGTGATACTTAATCTTGCTAGTGATTACTTTGGTTTTGTGGAAGATGAAGATTTGAAGGTC CACGTTGCTGATGGAATTAAGTTTATCAGGGAGCTGAAAGATCCGTCAGTTGCCTGTGAAGTGCCAGTGGCTTTTGGCAATGGCAGTACAAACTCCTCCG ATAAGGATATGCCCAATTCTGATGCAGGGGACAAAGATAAACCTGGGATTGATATACTTGTTATTGACGTGGATTCAGCAGACTCAAGTTCTGGAATGAC TTGCCCTGCCGCTGATTTCGTTGAGGAGGCATTTCTTCTGACAGTAAAGAATGCTCTTTCGAAGCAAGGTTTGTTCGTGGTTAATTTGGTGGCGAGGTCA TCTGCAATGAAAGAGATAGTAGTATCTAGGATGAAAATGGTATTCAGCCACCTGTATAGCCTTCAGCTGGAGGAAGATGTGAACATGATTCTTTTCGGGG TGAGCTGCGAGGAGTCAATTGCAGAGGAGTCGTTCCCTGAATCAGCCCAACGACTGGAGAAGCTGCTGAAGTTGAGACACCAGGAGATGAGCCAAAGCAT TGTGGATGGCACAAAGAAGATCATATGCTTGAAATGA
AA sequence Show only first row Show all	>Lus10016656 pacid=23143968 polypeptide=Lus10016656 locus=Lus10016656.g ID=Lus10016656.BGIv1.0 annot-version=v1.0 MGKKGKQPSRSQPSSADDLPSSADDLLTTLGDFTSKENWDKFFTIRGANDSFEWYAEWPQLSQPLLSLLSAAPSSPEILVPGCGNSRLSEHLYDAGLKSI TNVDFSKVVISDMLKRNVRERPGMKWRVMDITSMRFEDETFDAVLDKGGLDALMEPEMGSNLGNQYLSEVRRVLKPGGKFICLTLAESHVLGLLFPKFRF GWKMAVHSIPQKPSKKPSLVTFMVVAEKDNYPTVLSPITSSLRTSVDCSGNQAAGLFEALERENQIRQEHLSGSDILYSLEDLQLGAKGDMMKLNKGRRC LVTLGGEGNSRFSYKAILLDAKENSGPFSYHCGVFIVPKARAHEWLFSSEEGQWLVVESAKAGRLIMVILDSSHSNASMDDIQSDLSPLVKKLAPGVGDD VGGQIPFMMAGDGIKQRNNVHQVTSPLTGPVIVEDVVYENFDGDAGILFPSRDLVFRRLVFQRTENLVQSEALLSTNEAQKGDQGERRISNSSSKSKKKQ DLKQKDESSSLLQVYHDYLASSYHLGIISGFVLITSYLENMASAGKKVNAVVIGLGAGLLPLFLHRSIPFLHCEVVELDPVILNLASDYFGFVEDEDLKV HVADGIKFIRELKDPSVACEVPVAFGNGSTNSSDKDMPNSDAGDKDKPGIDILVIDVDSADSSSGMTCPAADFVEEAFLLTVKNALSKQGLFVVNLVARS SAMKEIVVSRMKMVFSHLYSLQLEEDVNMILFGVSCEESIAEESFPESAQRLEKLLKLRHQEMSQSIVDGTKKIICLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31740			S-adenosyl-L-methionine-depend...		Lus10016656 [exp]	0	1
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	1.4	0.9137
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	3.5	0.9011
AT5G58370			P-loop containing nucleoside t...		Lus10009919 [exp]	5.3	0.8916
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10011867 [exp]	7.3	0.8355
AT1G42440			unknown protein		Lus10013232 [exp]	8.1	0.8943
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	8.5	0.8858
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	9.4	0.9036
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	10.1	0.8928
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	11.1	0.8999
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	12.6	0.8804

Compare expression of checked genes

Lus10016656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.