Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04920 1582 / 0 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G20280 1115 / 0 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT4G10120 1092 / 0 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G11110 1042 / 0 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT5G49190 131 / 6e-31 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT5G20830 129 / 4e-30 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT1G73370 127 / 9e-30 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT3G43190 125 / 5e-29 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT4G02280 120 / 2e-27 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G37180 103 / 4e-22 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038119 [exp] 1139 / 0 AT5G20280 1647 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Lus10041041 [exp] 1034 / 0 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Lus10008056 [exp] 988 / 0 AT5G11110 1384 / 0.0 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) Lus10022570 [exp] 928 / 0 AT1G04920 717 / 0.0 sucrose phosphate synthase 3F (.1) Lus10006186 [exp] 239 / 8e-72 AT4G10120 303 / 8e-96 Sucrose-phosphate synthase family protein (.1.2) Lus10006184 [exp] 176 / 9e-51 AT4G10120 208 / 4e-63 Sucrose-phosphate synthase family protein (.1.2) Lus10006185 [exp] 159 / 5e-44 AT4G10120 189 / 2e-55 Sucrose-phosphate synthase family protein (.1.2) Lus10006183 [exp] 132 / 1e-34 AT4G10120 202 / 1e-59 Sucrose-phosphate synthase family protein (.1.2) Lus10020506 [exp] 135 / 5e-32 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057800 [exp] 1702 / 0 AT1G04920 1610 / 0.0 sucrose phosphate synthase 3F (.1) Potri.001G317600 [exp] 1682 / 0 AT1G04920 1644 / 0.0 sucrose phosphate synthase 3F (.1) Potri.018G025100 [exp] 1149 / 0 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.006G064300 [exp] 1140 / 0 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G124677 [exp] 1134 / 0 AT5G20280 1601 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.013G095500 [exp] 1128 / 0 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.T124307 [exp] 1004 / 0 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.006G136700 [exp] 128 / 4e-30 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G063500 [exp] 123 / 2e-28 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.002G202300 [exp] 122 / 3e-28 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF00862 [flax] [poplar] Sucrose_synth Sucrose synthase CL0137 [flax] [poplar] HAD PF05116 [flax] [poplar] S6PP Sucrose-6F-phosphate phosphohydrolase
Representative CDS sequence Show only first row Show all	>Lus10016657 pacid=23143926 polypeptide=Lus10016657 locus=Lus10016657.g ID=Lus10016657.BGIv1.0 annot-version=v1.0 ATGGCCGGGAACGAGTGGATAAATGGTTACCTGGAGGCGATACTGGACAGCGGCGCCGGGGGTTCGATCGAGGACAAGCCGGGTGCATCTACGGTGGATT TGAGAGAAAGGGAAAATTTCAATCCCACAAAGTACTTCGTCGAGGAGGTGGTAACCAGCGTCGACGAGACCGATCTCCACCGTACATGGATAAAGGTGGT CGCTACCCGCAACACTCGGGAGCGCAGCTCCAGGCTCGAGAATATGTGTTGGCGCATTTGGCACCTCACTCGCAAGAAAAAGCAGCTCGAATGGGAAGAA GTGCAAAGAATATCGAAACGACGAATGGAACGGGAACAAGGGCGGAGGGACGCGACTGAGGACTTGTCGGAGGACCTATCCGAAGGAGAAAAAGGAGATG GGGTAGGGGAGCTGGTGCAGAACGAGACACCACCCAAGAAAACTTTCCAACGCAACTCTTCCAACTTGGAAGTATGGTCGGATGATAAAAAGGAAAAGAA GCTTTATATTGTTCTTATTAGTTTACATGGTCTCGTTCGTGGAGATAATATGGAGCTCGGACGAGATTCTGATACTGGAGGTCAGGTCAAATATGTAGTT GAACTTGCTAGAGCTCTTGCCAAGATGCCTGGGGTGTACAGGGTGGATCTTTTCACCCGTCAAATTTTATGTCCTGATGTGGATTGGAGCTATGGTGAGC CGACAGAGATGTTGACTTCGGGTGTTGAGGATGGCGATGGAAATGATATGGGTGAGAGCAGTGGGACATATATTGTAAGAATCCCGTTTGGTCCACGAGA TAAGTATCTAAGGAAAGAACTCCTATGGCCATACATTCAAGAATTTGTAGATGGAGCTCTTGTTCACATTCTTAACATGTCAAAAGTCTTGGGTGAACAA ATTGGAGAAGGGAAACCTGTTTGGCCATATGTCATTCATGGACACTATGCAGATGCTGGTGACAGTGCTGCATTACTCTCAGGTGCTTTGAATGTACCAA TGGTTTTAACTGGACATTCACTTGGAAGAAACAAGCTTGAGCAGCTTCTTAAGCAGGGGCGTCAATCAAAGGATGATATTAACTCAACATATAAGATTAT GAGGAGGATAGAAGGAGAAGAGCTAGCACTTGATGCTGCCGAATTGGTAATCACTAGTACCAAGCAAGAAATTGAAGACCAATGGGGACTTTATGATGGC TTTGATGTCAAGCTCGAAAAAGTTTTACGCGCTCGATCTAGACGCAGGGTTAACTGCCATGGGCGGTACATGCCACGGATGGTGGTCATACCTCCTGGTA TGGACTTCAGTAATGTTGTGATTCAAGAGGATACGCCTGAAGTTGATGGGGAACTTACGTCACTTATTGGTGGCATTGAAGGATCTTCTCCGAAAGCAAT TCCAACAATATGGGCTGATGTAATGCGATTCCTTACGAATCCCCACAAGCCAATGATTTTGGCTTTGTCTAGGCCTGATCCTAAAAAGAATCTTACGACT CTTTTGAAAGCCTTTGGAGAATGTCGTCCATTGAGAGAACTTGCGAATCTTACACTGATAATGGGAAACAGGGATGACATAGATGAGATGTCTGGAGGAA ATGCAAGCGTTCTAACCACAGTTTTGAAGATGATTGATAAGTATGACCTTTATGGCCTAGTTGCCTACCCAAAGCATCACAAGCAAGCAGATGTTCCGGA GATTTACCGGCTTGCTGCAAAAACAAAGGGAGTGTTCATCAATCCAGCATTGGTTGAGCCTTTTGGTCTTACATTAATTGAGGCAGCAGCTCATGGTCTT CCAATGGTGGCTACCAAAAATGGAGGACCAGTTGACATTAATCGGGCTCTGAACAATGGTCTGCTGGTGGACCCTCATGACCAACACGCCATTGCTGATG CATTACTAAAATTGGTGTCAGAGAAGAACTTATGGCATGATTGCAGAAGGAATGGTTGGAAGAACATACACCTCTTTTCGTGGCCAGAACACTGCCGCAC ATACTTGACAAGGGTAGCAGCGTGCCGGATGAGACACCCTCAGTGGCAAACCGATACTCCTGGGGATGAGTTTCCAGCTGAACAGTCATCTCTTAATGAT TCCCTGATGGATGTCCAAGATATGTCCCTCAGGCTCTCCATCGATGGAGTCAACGGATCTGTCGATTACTTGGGTGTAGGTGGCGGTGGTGGTGGCGGTG ACCTTCAAGATCAAGTGAAAAATGTTATGAGCAGGATGAGGAAGCCAGAAGTTTCACTGGAAGAGAATGAATCTGGGAAGCCTGAAGTTGGGGTGAGCAA GTATCCCTTGTTAAGGAAGAGGCGTAGGTTGATTGTTATAGCCCTTGACTGCTATGACAACAAGGGAGAACCTGAAGGCAAGATGATTAAGATTCTTCAG GATATAATCAAGGCCATTCGCATGGACTCATTATTTGCAAGAGTATCAGGAATAGCCATATCAACCGCCATGTCATTGTCTGAAACCCAGAGCTTCCTAA AATCAGCAAAGCTTCAAGCAATAGAGTTCGATGCATTGATTTGCAGTAGTGGGAGTGAATTGTATTATCCTGGTACTTATGCTGAAGGAGATGGTAAGCT TTATCCTGATCCTGACTATGCCACACATATAGACTACCGATGGGGTTGTGAAGGTCTAAAAAATACTATATGGAAGCTGATGAATTCAACTGAAGGTGAC AGTATTCAATCCAAAAGTAAGCAGTCAAGCCCCATCCAAGAAGATGATAAACTGAGCAAAGATCATTGCATCACTTACACGATCAAGGACCCCAGCCGAG TAATGAGAGTGCAGGACCTGAGGCAGAAGTTAAGGATGCGAGGTCTTCGTTGCCATCCAATGTACTGCAGAGCCTCAACGCGAATGCAAATCATTCCTTT GCTTGCTTCGAGAGCACAAGCACTCAGATACCTGTTTGTGAGGTGGAGACTGAATATTGGGAACATGTTCGTGATACTTGGGGAAACTGGAGACACTGAT TACCAAGAAATGATATCAGGAGCCCATAAAACCATAATAATGAAAAATGTGGTGAAGAAAGGGTCGGAAGAATTGATGAGATCCGAGATTAGAGAGGATA TGGTGCCAAAGGATAGCCCTCTAGTTGCGTTCATGAAGGGAGATGCCACGTCAGAGGACATAGCCACAGCTCTCAAGCAGGTGTCTAAGGCTACTGCTGG AATGTGA
AA sequence Show only first row Show all	>Lus10016657 pacid=23143926 polypeptide=Lus10016657 locus=Lus10016657.g ID=Lus10016657.BGIv1.0 annot-version=v1.0 MAGNEWINGYLEAILDSGAGGSIEDKPGASTVDLRERENFNPTKYFVEEVVTSVDETDLHRTWIKVVATRNTRERSSRLENMCWRIWHLTRKKKQLEWEE VQRISKRRMEREQGRRDATEDLSEDLSEGEKGDGVGELVQNETPPKKTFQRNSSNLEVWSDDKKEKKLYIVLISLHGLVRGDNMELGRDSDTGGQVKYVV ELARALAKMPGVYRVDLFTRQILCPDVDWSYGEPTEMLTSGVEDGDGNDMGESSGTYIVRIPFGPRDKYLRKELLWPYIQEFVDGALVHILNMSKVLGEQ IGEGKPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRNKLEQLLKQGRQSKDDINSTYKIMRRIEGEELALDAAELVITSTKQEIEDQWGLYDG FDVKLEKVLRARSRRRVNCHGRYMPRMVVIPPGMDFSNVVIQEDTPEVDGELTSLIGGIEGSSPKAIPTIWADVMRFLTNPHKPMILALSRPDPKKNLTT LLKAFGECRPLRELANLTLIMGNRDDIDEMSGGNASVLTTVLKMIDKYDLYGLVAYPKHHKQADVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGL PMVATKNGGPVDINRALNNGLLVDPHDQHAIADALLKLVSEKNLWHDCRRNGWKNIHLFSWPEHCRTYLTRVAACRMRHPQWQTDTPGDEFPAEQSSLND SLMDVQDMSLRLSIDGVNGSVDYLGVGGGGGGGDLQDQVKNVMSRMRKPEVSLEENESGKPEVGVSKYPLLRKRRRLIVIALDCYDNKGEPEGKMIKILQ DIIKAIRMDSLFARVSGIAISTAMSLSETQSFLKSAKLQAIEFDALICSSGSELYYPGTYAEGDGKLYPDPDYATHIDYRWGCEGLKNTIWKLMNSTEGD SIQSKSKQSSPIQEDDKLSKDHCITYTIKDPSRVMRVQDLRQKLRMRGLRCHPMYCRASTRMQIIPLLASRAQALRYLFVRWRLNIGNMFVILGETGDTD YQEMISGAHKTIIMKNVVKKGSEELMRSEIREDMVPKDSPLVAFMKGDATSEDIATALKQVSKATAGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10016657 [exp]	0	1
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	1.4	0.9627
AT2G33793			unknown protein		Lus10011183 [exp]	3.9	0.9535
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10012555 [exp]	4.6	0.9511
AT5G36930			Disease resistance protein (TI...		Lus10007825 [exp]	5.9	0.9596
AT5G01950			Leucine-rich repeat protein ki...		Lus10003244 [exp]	6.2	0.9552
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10018857 [exp]	6.3	0.9517
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	6.3	0.9618
					Lus10017917 [exp]	9.3	0.9616
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017705 [exp]	13.0	0.9338
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	13.9	0.9609

Compare expression of checked genes

Lus10016657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.