Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13780 1261 / 0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) AT2G40660 156 / 2e-41 Nucleic acid-binding, OB-fold-like protein (.1) AT3G55400 157 / 5e-40 OVA1 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) AT3G59980 145 / 7e-39 Nucleic acid-binding, OB-fold-like protein (.1) AT5G02680 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022571 [exp] 1535 / 0 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10010450 [exp] 975 / 0 AT4G13780 937 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10029026 [exp] 176 / 4e-48 AT2G40660 424 / 1e-147 Nucleic acid-binding, OB-fold-like protein (.1) Lus10034239 [exp] 175 / 1e-47 AT2G40660 413 / 3e-143 Nucleic acid-binding, OB-fold-like protein (.1) Lus10027077 [exp] 159 / 3e-43 AT3G59980 284 / 4e-96 Nucleic acid-binding, OB-fold-like protein (.1) Lus10025611 [exp] 158 / 1e-42 AT3G59980 280 / 3e-94 Nucleic acid-binding, OB-fold-like protein (.1) Lus10005156 [exp] 152 / 3e-38 AT3G55400 931 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10001704 [exp] 135 / 1e-32 AT3G55400 891 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10015552 [exp] 47 / 0.0001 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057700 [exp] 1365 / 0 AT4G13780 1255 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.001G317500 [exp] 1341 / 0 AT4G13780 1260 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.019G058700 [exp] 168 / 1e-45 AT2G40660 396 / 6e-137 Nucleic acid-binding, OB-fold-like protein (.1) Potri.010G207300 [exp] 163 / 4e-42 AT3G55400 935 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Potri.017G000200 [exp] 150 / 1e-40 AT3G59980 276 / 6e-93 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01588 [flax] [poplar] tRNA_bind Putative tRNA binding domain CL0039 [flax] [poplar] HUP PF09334 [flax] [poplar] tRNA-synt_1g tRNA synthetases class I (M)
Representative CDS sequence Show only first row Show all	>Lus10016658 pacid=23143912 polypeptide=Lus10016658 locus=Lus10016658.g ID=Lus10016658.BGIv1.0 annot-version=v1.0 ATGGCAGATCACTCAACTGCCGACCACCGGAAGGCCCCCAAGCTCCCGGTTCCTGGACAAAAAAACATCCTCATCACCAGCGCCTTGCCATACGTCAATA ACGTCCCTCATCTCGGAAACATCATCGGATGTGTACTGAGTGCTGATGTGTTTGCCCGGTACTGTCGGCTGCGAGGTTACAATGTCATTTACATCTGTGG AACTGACGAGTATGGGACTGCTACGGAGACCAAAGCCTTGGAGGAAAAATGCTCTCCTAAGGAAATTTGTGACAAATACCATGCAATTCATCGGGAAGTT TATGAGTGGTTTAATATCAGTTTTGATGAATTTGGGCGCACCTGCACTCCACAGCAGACTGAAGTCTGTCAATCTGTTTTCAAGAAACTTCTTGAAAACA ACTGGCTTTCTGAGAATACAATGCAACAGCCGTATTGCGACACATGCAAAAGGTTCTTGGCTGATCGCTTTGTTGAGGGCACTTGTCCAACTGAAGGCTG TAATTATGAATCCGCAGGAGGAGATCAGTGTGACAAGTGCCAAAAAGTTTATAATCCAGCTGAGCTGAAGGATCCCAAGTGTAAGGTTTGTCGTAACACT CCACGTATTCGGGAGACAGATCACTTGTTTCTTGAGCTTCCCTTGCTAAAGGATCAACTTGCGAAATATATTGAGGACACGTCTTTAGCTGGATCTTGGA GCCATAATGCCATCAATACAACCAATAGCTGGCTCAAAGATGGGTTGAAACCACGTTGTATTACCAGGGATTTGAAATGGGGGGTTCCAGTTCCACATGA GAAATTTAAGGACAAGGTTTTCTATGTCTGGTTTGATGCTCCTATCGGATACGTATCAATCACAGCATGCTACACCCCGGATTGGGAGAAATGGTGGAAG AATCCTGCGAACGTTGAGCTGTATCAGTTTATGGGAAAGGACAATGTTCCCTTCCACACTATTATGTTTCCTTCTTCACTTATTGGAACTGGTGAAAATT GGACTATGATGAAGACTATAAGTGTGACAGAGTACTTGAACTATGAATCAGGGAAGTTCTCAAAGAGTAAAGGGATCGGAGTTTTTGGAAATGATGCGAA GGATACTAGCATTCCTGTTGAAGTATATCGATATTATTTACTGGCAAACCGACCCGAGGTATCTGATACACTTTTTACGTGGTCGGATTTGCAAGCCAAA CTTAACAACGAATTAATCAACAATCTGGGGAACTTCATCAACAGAGTCTTAAGTTTTATTGCCAAACCAGAAGGTACTGGATATGGTTCAATCATCCCAG ATGCTCCAGGTGCAGAGTCACATCCATTGACAATGAAATTGGCTGAAGAAGTTAGCCGACTTGTGGTCCAATATCTAGAAGCCATGAAGAAGGTCAAACT GAAACAAGGGCTTAAAATAGCCATGAGCATTTCAAGTGAGGGAAATTCATATCTTCAAGAAAGTCAATTCTGGAAGCTTTACAAGGAAGACCAACCTTCC TGTTCCATTGTGATGCGGACCTCGGTTGGATTAGTATATCTTCTTGCATGTTTACTGGAACCTTACATGCCATCCTTCTCTCTTGAGGTTTTCAAGCAGA TCAATTTGCCTTTTGAACAAGCTTCACTCTCTGAGGAAAAAGGAGACATTGACAAGGCTAAAAGGCCTTGGCAGATCATTCCTCGTGGTCATAAAATTGG GACGCCAGAGCCTTTGTTTAAGGAACTAAAAGATGAAGAGGTGGAGTTGTACAGAAACAAATTTGCTGGGAGTCAGGCTGATAGGTTAGAGAAGGCAGAG GCAGAAGCTGGTAAGGTTGCTGCACAATTGAAGAAGGCAAAAATTTCAGATGGTGTGAAAAAGCAACAGAGTAAAAAACCGGCTGCAGGTGGCAAGTCAA AGGGAACAGCTGAGGCCGAAATCACCATTACAAGACTGGACATCCGTGTTGGCTTGATAACAAAAGCACAGAAGCATCCTGATGCGGACTCCCTCTATGT TGAAGAAATCGATGTGGGTGAAGCAGAACCGAGAACAGTGGTCAGTGGACTTGTCAAGTACATACCTCTGGAAGAGATGCAGAACCGTAAGGTGTGTGTT CTCTGCAATTTAAAGCCAGCAACCATGAGGGGAATCAAGTCACAGGCCATGGTTCTTGCTGCTTCCAACAGCGACCACACCCAGGTTGAATTAGTAGAAC CACCTGAATCTGCTGCTGTGGGGGAGAGAGTGAAGTTTGCTGGGTTTGAAGGGGAGCCAGATGAGGTACTAAACCCAAAGAAGAAGGTGTGGGAGACGCT GCAAGTGGACTTTAAGACTAACGGTGATTTAGTTGCTTGCTTCAAAGATATCCCGTTCACGACATCGGGAGGAGAGTGCAAGGTTGCCACCATAAGTAAT GGTACCATAAGGTAA
AA sequence Show only first row Show all	>Lus10016658 pacid=23143912 polypeptide=Lus10016658 locus=Lus10016658.g ID=Lus10016658.BGIv1.0 annot-version=v1.0 MADHSTADHRKAPKLPVPGQKNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNVIYICGTDEYGTATETKALEEKCSPKEICDKYHAIHREV YEWFNISFDEFGRTCTPQQTEVCQSVFKKLLENNWLSENTMQQPYCDTCKRFLADRFVEGTCPTEGCNYESAGGDQCDKCQKVYNPAELKDPKCKVCRNT PRIRETDHLFLELPLLKDQLAKYIEDTSLAGSWSHNAINTTNSWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYVSITACYTPDWEKWWK NPANVELYQFMGKDNVPFHTIMFPSSLIGTGENWTMMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTSIPVEVYRYYLLANRPEVSDTLFTWSDLQAK LNNELINNLGNFINRVLSFIAKPEGTGYGSIIPDAPGAESHPLTMKLAEEVSRLVVQYLEAMKKVKLKQGLKIAMSISSEGNSYLQESQFWKLYKEDQPS CSIVMRTSVGLVYLLACLLEPYMPSFSLEVFKQINLPFEQASLSEEKGDIDKAKRPWQIIPRGHKIGTPEPLFKELKDEEVELYRNKFAGSQADRLEKAE AEAGKVAAQLKKAKISDGVKKQQSKKPAAGGKSKGTAEAEITITRLDIRVGLITKAQKHPDADSLYVEEIDVGEAEPRTVVSGLVKYIPLEEMQNRKVCV LCNLKPATMRGIKSQAMVLAASNSDHTQVELVEPPESAAVGERVKFAGFEGEPDEVLNPKKKVWETLQVDFKTNGDLVACFKDIPFTTSGGECKVATISN GTIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13780			methionine--tRNA ligase, putat...		Lus10016658 [exp]	0	1
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10034788 [exp]	1.0	0.9711
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10002624 [exp]	2.4	0.9565
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008664 [exp]	2.8	0.9546
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10035786 [exp]	5.1	0.9584
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10032368 [exp]	5.3	0.9448
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	5.5	0.9531
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	6.5	0.9515
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10041999 [exp]	7.4	0.9540
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	8.0	0.9409
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10021402 [exp]	8.8	0.9450

Compare expression of checked genes

Lus10016658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.