Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52820 446 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 355 / 6e-123 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52800 285 / 1e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G28030 280 / 3e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52790 276 / 3e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80320 244 / 3e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52810 239 / 7e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15540 203 / 2e-63 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03050 164 / 1e-48 AOP3 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G51810 117 / 4e-30 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023024 [exp] 382 / 1e-133 AT1G52820 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005516 [exp] 286 / 4e-95 AT1G52820 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023160 [exp] 272 / 2e-91 AT1G52820 244 / 1e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006575 [exp] 236 / 4e-77 AT1G52820 221 / 1e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008097 [exp] 216 / 1e-68 AT1G52800 221 / 2e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013132 [exp] 211 / 1e-66 AT1G52800 222 / 8e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013130 [exp] 207 / 9e-65 AT1G52820 200 / 3e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10041281 [exp] 200 / 3e-63 AT1G52790 298 / 5e-102 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021025 [exp] 197 / 3e-61 AT1G52800 226 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176200 [exp] 476 / 9e-171 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175800 [exp] 321 / 2e-109 AT1G52820 338 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175900 [exp] 315 / 4e-107 AT1G52820 328 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176500 [exp] 312 / 4e-106 AT1G52800 338 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176000 [exp] 303 / 1e-102 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G248000 [exp] 261 / 2e-85 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G033400 [exp] 258 / 6e-85 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176100 [exp] 241 / 4e-78 AT1G52800 286 / 5e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G128100 [exp] 140 / 3e-39 AT4G23340 458 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.002G159500 [exp] 135 / 2e-37 AT4G23340 402 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10016659 pacid=23143917 polypeptide=Lus10016659 locus=Lus10016659.g ID=Lus10016659.BGIv1.0 annot-version=v1.0 ATGGGTTCAGATTCTCCTGAGAAGCTCCCTTTCATAGATTTCTCAAACCAGCTAGAACTGAAAGCAGGCAATCCCGACTGGGAAATCCTGAGATCGCAAG TCCGCGGAGCACTTGAAGAGTACGGCTGCTTCGAGGCATCCTACAACAGGGTTTCCACAGACCTCTGCAGCGATGCAGTCACATCTCTGGAAGAGCTTTT CAGCCTTCCTTTACCCATCAAACTGCAAAATGCTTCCAAGAAGCCCTTCCATGGCTACGTAGGCCAGTATCCTCAGGTTCCACTCTACGAAAGCATGGGA ATCGATGACGCCAATGTCTCCGAAAAGGTTGAAACCTTGACCACTACCCTCTGGCCACAAGGAAACCCGAATTTCAGCAAAACCATCCAGCTGTACTCGG AGCAGGTATTGGAGTTGGACAAAATGGTTAGAGAAATGATTGTTGAAAGCTTTGGACTTGAGAAATACATGGAGGAGCACTTGGATTCAACAAATTACCT ACTGAGAGTCATGAAATACAAAGGGCCTCAAACCCCTGAGACGAGACTTGGTCTGAATTCTCACACCGACAAAAATATAGTGACCATATTGTATCAGAAT CAAGTTGAAGGACTAGAGGTGCAAACCAAAGATGGCACATGGATCAAATTCCAACCATCCCCAACCTCTTTCATCGTCATGATTGGCGATTCACTCAACA CGTGGTTGAATGGGCGGCTCCATTCTCCGATGCATCGAGTGATGATGAGTGGAAACGAAGCGAGATATTCGTTGGGGTTATTTTCAGTGCCGAAAGCTGG GTATATAATAAAAGCACCGGCGGAAATGGTGGACGAACAACATCCATTGTTGTTCAAGCCATTTGATCATGTGGAGTTCCTGTCCTTTTACTACTCTCCA GCTGGCCAAACAGCACCTTCAGCTTTGAATGCATATTGTGGAATTTGA
AA sequence Show only first row Show all	>Lus10016659 pacid=23143917 polypeptide=Lus10016659 locus=Lus10016659.g ID=Lus10016659.BGIv1.0 annot-version=v1.0 MGSDSPEKLPFIDFSNQLELKAGNPDWEILRSQVRGALEEYGCFEASYNRVSTDLCSDAVTSLEELFSLPLPIKLQNASKKPFHGYVGQYPQVPLYESMG IDDANVSEKVETLTTTLWPQGNPNFSKTIQLYSEQVLELDKMVREMIVESFGLEKYMEEHLDSTNYLLRVMKYKGPQTPETRLGLNSHTDKNIVTILYQN QVEGLEVQTKDGTWIKFQPSPTSFIVMIGDSLNTWLNGRLHSPMHRVMMSGNEARYSLGLFSVPKAGYIIKAPAEMVDEQHPLLFKPFDHVEFLSFYYSP AGQTAPSALNAYCGI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10016659 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	7.4	0.9033
AT2G34930			disease resistance family prot...		Lus10006948 [exp]	7.7	0.9012
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036353 [exp]	8.5	0.8966
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	10.0	0.8999
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	10.8	0.9031
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Lus10026200 [exp]	11.4	0.8887
AT5G43060			Granulin repeat cysteine prote...		Lus10027877 [exp]	12.1	0.8934
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012147 [exp]	14.6	0.8022
					Lus10022643 [exp]	15.3	0.8602
AT2G17080			Arabidopsis protein of unknown...		Lus10014448 [exp]	17.3	0.8728

Compare expression of checked genes

Lus10016659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.