Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32760 366 / 5e-126 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022576 [exp] 592 / 0 AT2G32760 384 / 4e-133 unknown protein Lus10037826 [exp] 266 / 3e-89 AT2G32760 172 / 2e-53 unknown protein Lus10022575 [exp] 225 / 9e-74 AT2G32760 111 / 5e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G056800 [exp] 437 / 4e-154 AT2G32760 368 / 5e-127 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016662 pacid=23143954 polypeptide=Lus10016662 locus=Lus10016662.g ID=Lus10016662.BGIv1.0 annot-version=v1.0 ATGGAACGCGGCCACAGTCTCTCGTCAGAGCCAACGACGGGGAAGAAAAGTAGCGTCAAATCGGTGAGTGTGAAATTGATCGAATGGGAGGATTACGAGC AGGAAGTAGCACGATTGTGGAGCCTTTCCTCTGCTCTGAAGGAAGCTAGGGATAGAAAGGAAGCTCTTCAGGGAAAGATTCATTCACTCATTCAGGTTGA AGCTGAGTCGATAAGTAGATTGAATGTACTTGAAGAGATTCGGGAGAGGGTTGAAGCTAGAAAGAAGGTTATGGAGAGTTTGTCAGTACGGTCACAGGGA GCAGCAGAGAAACCTAAGAAGGAAGAAGCAAGGCTTGGTGCAGAAGTCAGATCCCTTTTGGTTGCAGGAACTGCTCTTTCTGCGGCTAATAAGCATCTGG AGGAATCAAATACCCTGTTTGCTGGAGAAAGTGGGTTTCTACGCTTCAGAAATTTGCAGAAGATGCTAAGGTCGAGGCAACAATTTATGATATCACAGGT TTCGTTGCTTTATTCTGTGAAAATGTCACCAGGGCCTTCACATGACCAGGAACTTGAATCTCTCCCAAGCACTAGTAAATCAGGGAACTCTGGTGGATCT AAGCTTCTTAATCCGGGATCCTTGACAATTTTAGGTCTGCATTTGACTATGCTTCCTTTTACAAAGATGAGCTTTTTCTCCAATAAGAAGGAGGTCCAGA GGTCTGCAACAGCCCTAGGATATGTTGCTCATGCTGTGTCACTAGTATCCTCATACTTGAAAGTTCCCATCCGTTACCCTGTCCGGTTGGGTGGCTCTCA TTCTTATATCATTGATCCAGCACCATCAACGGAGCCTACGTCATTGACATTAGGGTCTTCAAGTATAAAATCTCTCAGCAATGCGAAGCCAGTTGAATTC CCTCTTTTCTTAGATGGTCAAGATACAACAAGAGCAGCTTATGCTGTATTCCTATTGAACAAGGATTTGGAGCAGCTGTTGAATTACATCGGAGTGAAGA GTCTAGGGCCACGCCATGTATTGGCTAATATGAAGGAGCTTGTAAGGACAGTTCAGTCTGCTGATTTTCTAGAATGGTGA
AA sequence Show only first row Show all	>Lus10016662 pacid=23143954 polypeptide=Lus10016662 locus=Lus10016662.g ID=Lus10016662.BGIv1.0 annot-version=v1.0 MERGHSLSSEPTTGKKSSVKSVSVKLIEWEDYEQEVARLWSLSSALKEARDRKEALQGKIHSLIQVEAESISRLNVLEEIRERVEARKKVMESLSVRSQG AAEKPKKEEARLGAEVRSLLVAGTALSAANKHLEESNTLFAGESGFLRFRNLQKMLRSRQQFMISQVSLLYSVKMSPGPSHDQELESLPSTSKSGNSGGS KLLNPGSLTILGLHLTMLPFTKMSFFSNKKEVQRSATALGYVAHAVSLVSSYLKVPIRYPVRLGGSHSYIIDPAPSTEPTSLTLGSSSIKSLSNAKPVEF PLFLDGQDTTRAAYAVFLLNKDLEQLLNYIGVKSLGPRHVLANMKELVRTVQSADFLEW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32760			unknown protein		Lus10016662 [exp]	0	1
AT4G19003		VPS25	E2F/DP family winged-helix DNA...		Lus10012273 [exp]	1.7	0.9351
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10001916 [exp]	2.0	0.9351
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	2.4	0.9294
AT1G80910			Protein of unknown function (D...		Lus10034582 [exp]	3.5	0.9211
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	3.7	0.9368
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	4.7	0.9361
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	5.5	0.9324
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10033568 [exp]	5.9	0.9090
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10015524 [exp]	6.5	0.9293
AT2G31800			Integrin-linked protein kinase...		Lus10027107 [exp]	9.2	0.9202

Compare expression of checked genes

Lus10016662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.