Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04860 356 / 5e-107 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT2G32780 325 / 5e-95 ATUBP1 ubiquitin-specific protease 1 (.1) AT1G32850 80 / 8e-15 UBP11 ubiquitin-specific protease 11 (.1) AT4G10590 75 / 2e-13 UBP10 ubiquitin-specific protease 10 (.1.2) AT4G10570 75 / 2e-13 UBP9 ubiquitin-specific protease 9 (.1) AT2G40930 73 / 9e-13 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT5G22030 69 / 1e-11 UBP8 ubiquitin-specific protease 8 (.1.2) AT3G11910 66 / 1e-10 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT4G31670 65 / 3e-10 UBP18 ubiquitin-specific protease 18 (.1) AT5G06600 64 / 4e-10 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016664 [exp] 1647 / 0 AT1G04860 669 / 0.0 ubiquitin-specific protease 2 (.1) Lus10007120 [exp] 1165 / 0 AT1G04860 521 / 1e-172 ubiquitin-specific protease 2 (.1) Lus10007121 [exp] 308 / 1e-98 AT1G04860 125 / 2e-33 ubiquitin-specific protease 2 (.1) Lus10032623 [exp] 80 / 1e-14 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043127 [exp] 78 / 3e-14 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 77 / 4e-14 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10001661 [exp] 77 / 6e-14 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10017343 [exp] 76 / 9e-14 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 76 / 1e-13 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315600 [exp] 826 / 0 AT1G04860 479 / 2e-153 ubiquitin-specific protease 2 (.1) Potri.017G055600 [exp] 803 / 0 AT1G04860 524 / 1e-170 ubiquitin-specific protease 2 (.1) Potri.016G031900 [exp] 81 / 4e-15 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.011G152500 [exp] 80 / 6e-15 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G449000 [exp] 77 / 3e-14 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.006G033800 [exp] 77 / 6e-14 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.006G201100 [exp] 70 / 7e-12 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.001G214800 [exp] 69 / 2e-11 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.003G092400 [exp] 68 / 2e-11 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.008G012600 [exp] 67 / 4e-11 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein
Representative CDS sequence Show only first row Show all	>Lus10016663 pacid=23143922 polypeptide=Lus10016663 locus=Lus10016663.g ID=Lus10016663.BGIv1.0 annot-version=v1.0 ATGGGGAAAAAGTTAAAGAAAAAGGGCCGTGCGCCTCAGACTCAGAAGGAGAAGAGGATAGTTAGCCACTCTCCTAGCAAGGTACCTCATCAACCAAATA TCAGTTTGAATGAGGACAAAGTTAGTGCTGATGTTGTCATGGTACCTGAACCGCGAAGAATATGTGCTCATCTGGAGAAGGGGTTTGATTTAACCCAGTT CACTGAGAAAATTAATTCTTCAGATTCTGTGAAGTGTGAGGATTGTCAGGAGGCTGTTGCTGACAGAAGGGGAGGAGCCAAAGGAAAGGGTAAACATGGG AAGAAGAAAGGAGCTGATTCCAAGTCTGATTCTAAGGCCATCTGGATATGCTTGAAATGTGGCCATTATGCTTGTGGAGGGGTTGGTTTACCAACTAACT CTCAGTGCCATGCGATGCGGCATGCTAAACAAAATGGTCACCCCTTGGCGATCCAGTTGGTGAACACGCATCTTAGGTGGTGCTTCAAGTGCAACAGCCT CATTCCAGCTGATAAATCAGAAGATAATGGTCAAAATAGGGATGCAATGGCTGATGCTGTAAAAGTTATCAAGGCTCATGCATCTCATACGCCATCAGTG CATGTTGAAGATGCTTGGTTTGGAAGTGGCAGTGTCTTGAGTGAAGTAAAAGCAGCAGGCACTGCCTCCAGTAGTTTACAAGGCAATGGCGGTTACATGG TGAGGGGCTTGGTTAACCTGGGGAACACTTGCTTTTTCAATTCGGTAATGCAGAATCTACTAGCTCTGAATAGTTTGAGGAGTTACTTTTTCAGTGAAGA TTCTTCTTATGGTCCTCTTTCTATTTCTTTGAGGAAGCTTTATGATGAAACAAGACAAGAGACAGGTATGAGAAATGTGATTAATCCGCGATCGTTTTTT GCGGGTCTCTGTTCTAAGGCTCCTCAGTTCAGGGGATATCAACAGCATGATAGTCATGAATTATTGCGTTGCTTGCTTGATGCATGGTCCACCGAAGAGT TGGCCAGAAGAAAACAGATCAGCGCATTTGAGCAAAGTGCTGTTTCTGTACCGAATCTTCCTACATTTGTGGATGCTGCGTTTGGAGGACGAATCTCTAG TACTGTATGTTGCATAGAATGTGCACATTCCTCAACTGTCTATGAGCCATTCTTGGACCTTTCTCTTCCAGTTCCAACAAAGAAGCCTCCAACTAAAAAG CTCCAGTCTTTATCTCGAGGAAAGAAGACCAAGCTACCACCAAAGCGAGCTGAAAAAGTTAGGCAAAAAACCAGCAAGGATACAGATCGAATGCATGCTG AGAGTGCCACAAGCTCCTCAACGAGCAATGAATTGGGCCACGAAACGCATTTAGCGACCCCTCTTAATGATAATGCAGCATCTTCCTTGGGTCCTACAGT GCCTGACTCTGCTGGCCGAACTCCCGAGCCTGAAGAAAAGGAGTCGGTACCTAGAAACTTATTGGACACTCATTGTGTGCAAAAGGAAGACCTTGGGGGT GCGCTGGAGCAAACATCATCTTTAGATGAATTTGCATGGATGGATTATCTAGAACCTGAAACTGAAACTATTTCAAACGAGAACGATCTGGCTCCACAAA TTGATGATTTATCAATTGTTCAATATTCACGGGAGCAAGATTTGGGCTCATCCGGGAAAGAGGAGACTCCTCCTTTTGGTCCAGTTCAACAAATCCCATA TCCAGAGCCAGAATCATCTTCGATAAATCCTTGGGAAGAGGAAGTCCCGTTGCAGGTCCAAAGCTCTGAAGTTCTGCTGCTTCCTTACTATGAAGAGAGC GTCACTTGTGGAGAAATTACTGCTGGAGAAGCTGAGGCCTCATCTTCAGTTGTGGGATGTGGACAGGATGAAGCAGCCTTTGACGGCTTTGGTGATATGT TCAACGAGCCTGAGGTTTTTATAGGCCCTGTTGCAGGGCCTGCTTTAAGCAATGGTCTTACGGCTGGCAATAGCAGCGACTCTGACCCTGGTGAAGTTGA TGACTCTGATTCTCCAGTATCCGTGGAAAGTTGTCTGGCCCACTTTATAAAGCCAGAAATTCTCTCCAATGATAATGCTTGGGAATGTGAGAACTGTTCC AAAACCGTACACCTCCAGGAGCGGAAGGCAAAGAAGAAGCTGGGAAGAATTGTAGTAGGAGTTTTAAATGGAGGCGAGATTAAAAGCCAAAATTTAGGCC CCTCGTGCTCGTCAGAAAATGCCACAAATGGGGAAGCCATCACAGATGCTCTTTACCATTCCAAAGATGAAAACATAGTTTCTAATGGTGGAGAAAATGA TTGCACAAGTGAAATTGTCATGATATCTGAAAACGGTCCAGTGCCACAATGTTGTCCTATTCAGGAAGAATCAGAAAGTCAGGATGGCTCACATACCCGT GGAGTTGATGATTCTGTTTCTACCTGCACTGGAAATACTGCTGCTGTGAATCAAGAGACTCAGTCACAGTCATCTACAAATGTTGAATCAGAAGAAAGTG AAGACGAAGAGAAAACAATCAAAAAAGTGATTGTGAAGAGGGACGCAACTAAAAGGGTCCTTATTGACAAAGCACCGCCAATACTGACAATACATTTGAA GAGGTTCAGCCAGGATTTTCGTGGACGATTGAGTAAATTGAATGGCCACGTTAACTTTAGAGATCAACTTGATCTTAGACCATACATGGATCCGAGGTGT GAAGATAAAGAGAGGAGTGTGTACCGATTGACAGGGGTCGTTGAACATCTGGGGACAATGCGAGGAGGCCATTATGTTGCATACATAAGAGGAGGAGGAG GAGGAGGAGGAGAGAAGAGCGGGGGTGGGTGGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGGACTTCACTGGATGTAG
AA sequence Show only first row Show all	>Lus10016663 pacid=23143922 polypeptide=Lus10016663 locus=Lus10016663.g ID=Lus10016663.BGIv1.0 annot-version=v1.0 MGKKLKKKGRAPQTQKEKRIVSHSPSKVPHQPNISLNEDKVSADVVMVPEPRRICAHLEKGFDLTQFTEKINSSDSVKCEDCQEAVADRRGGAKGKGKHG KKKGADSKSDSKAIWICLKCGHYACGGVGLPTNSQCHAMRHAKQNGHPLAIQLVNTHLRWCFKCNSLIPADKSEDNGQNRDAMADAVKVIKAHASHTPSV HVEDAWFGSGSVLSEVKAAGTASSSLQGNGGYMVRGLVNLGNTCFFNSVMQNLLALNSLRSYFFSEDSSYGPLSISLRKLYDETRQETGMRNVINPRSFF AGLCSKAPQFRGYQQHDSHELLRCLLDAWSTEELARRKQISAFEQSAVSVPNLPTFVDAAFGGRISSTVCCIECAHSSTVYEPFLDLSLPVPTKKPPTKK LQSLSRGKKTKLPPKRAEKVRQKTSKDTDRMHAESATSSSTSNELGHETHLATPLNDNAASSLGPTVPDSAGRTPEPEEKESVPRNLLDTHCVQKEDLGG ALEQTSSLDEFAWMDYLEPETETISNENDLAPQIDDLSIVQYSREQDLGSSGKEETPPFGPVQQIPYPEPESSSINPWEEEVPLQVQSSEVLLLPYYEES VTCGEITAGEAEASSSVVGCGQDEAAFDGFGDMFNEPEVFIGPVAGPALSNGLTAGNSSDSDPGEVDDSDSPVSVESCLAHFIKPEILSNDNAWECENCS KTVHLQERKAKKKLGRIVVGVLNGGEIKSQNLGPSCSSENATNGEAITDALYHSKDENIVSNGGENDCTSEIVMISENGPVPQCCPIQEESESQDGSHTR GVDDSVSTCTGNTAAVNQETQSQSSTNVESEESEDEEKTIKKVIVKRDATKRVLIDKAPPILTIHLKRFSQDFRGRLSKLNGHVNFRDQLDLRPYMDPRC EDKERSVYRLTGVVEHLGTMRGGHYVAYIRGGGGGGGEKSGGGWLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXIGLHWM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016663 [exp]	0	1
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	1.0	0.9305
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031185 [exp]	1.4	0.9274
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10034777 [exp]	1.7	0.9230
AT5G08500			Transmembrane CLPTM1 family pr...		Lus10016422 [exp]	5.7	0.8870
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10022701 [exp]	5.7	0.8780
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10003545 [exp]	7.3	0.8878
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	7.7	0.8840
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10002076 [exp]	9.2	0.8993
AT5G65950			unknown protein		Lus10037422 [exp]	10.4	0.9066
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032320 [exp]	11.4	0.8873

Compare expression of checked genes

Lus10016663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.