Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04860 348 / 1e-104 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT2G32780 310 / 9e-90 ATUBP1 ubiquitin-specific protease 1 (.1) AT2G24640 82 / 5e-16 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 82 / 1e-15 UBP18 ubiquitin-specific protease 18 (.1) AT5G46740 80 / 4e-15 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 80 / 4e-15 UBP20 ubiquitin-specific protease 20 (.1) AT5G22030 79 / 2e-14 UBP8 ubiquitin-specific protease 8 (.1.2) AT4G24560 78 / 3e-14 UBP16 ubiquitin-specific protease 16 (.1) AT1G32850 77 / 3e-14 UBP11 ubiquitin-specific protease 11 (.1) AT4G10570 74 / 3e-13 UBP9 ubiquitin-specific protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016663 [exp] 1649 / 0 AT1G04860 392 / 4e-120 ubiquitin-specific protease 2 (.1) Lus10007120 [exp] 1215 / 0 AT1G04860 521 / 1e-172 ubiquitin-specific protease 2 (.1) Lus10007121 [exp] 319 / 5e-103 AT1G04860 125 / 2e-33 ubiquitin-specific protease 2 (.1) Lus10026918 [exp] 84 / 2e-16 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 84 / 2e-16 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10015893 [exp] 82 / 5e-16 AT4G24560 306 / 2e-95 ubiquitin-specific protease 16 (.1) Lus10009273 [exp] 82 / 1e-15 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10032623 [exp] 80 / 1e-14 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 78 / 3e-14 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315600 [exp] 853 / 0 AT1G04860 479 / 2e-153 ubiquitin-specific protease 2 (.1) Potri.017G055600 [exp] 828 / 0 AT1G04860 524 / 1e-170 ubiquitin-specific protease 2 (.1) Potri.018G009500 [exp] 86 / 9e-17 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 81 / 2e-15 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.005G156900 [exp] 81 / 3e-15 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 81 / 3e-15 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.011G152500 [exp] 80 / 7e-15 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.018G107500 [exp] 79 / 1e-14 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.001G449000 [exp] 77 / 3e-14 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.011G095200 [exp] 77 / 4e-14 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein
Representative CDS sequence Show only first row Show all	>Lus10016664 pacid=23143934 polypeptide=Lus10016664 locus=Lus10016664.g ID=Lus10016664.BGIv1.0 annot-version=v1.0 ATGGGGAAAAAGTTAAAGAAAAAGGGCCGTGCGCCTCAGACTCAGAAGGAGAAGAGGTTAGTTAGCCACTCTCCTAGCAAGGTACCTCATCAACCAAATA TCCGTTTGAGTGAGGACAAAGTTAGTGCTGATGTTGTCATGGTACCTGAACCGCGAAGAATATGTGCTCATCTGGAGAAGGGGTTTGATTTAACCCAGTT TACTGAGAAAATTAATTCTTCAGATTCTGCGGAGTGTGAGGATTGTCAGGAGGCTGTTGCTGACAGAAGGGGAGGAGCCAAAGGAAAGGGTAAACATGGG AAGAAGAAAGGAGCTGATTCCAAGTCTGATTCTAAGGCCATCTGGATATGCTTGAAATGTGGCCATTATGCTTGTGGAGGGGTTGGTTTGCCAACTAACT CTCAGTGCCATGCTATGCGGCATGCTAAACAAAATGGTCACCCCTTGGCGATCCAGTTGGTGAACACGCATCTTAGGTGGTGCTTCAAGTGCAACAGCTT CATTCCAGCTGATAAATCAGAAGATAATGATGAAAATAGGGATGCAATGTCTGATGTTGTAAGAGTTATCGAGGCTCATGCATCTCATACGCCATCAGTG CATGTTAAAGATGCTTGGTTTGGAAGTGGCAGTGTCTTGAGTGAAAAAAAACCACCAGCCACTGTCTCCAGTAGTTTACAAGGCAATGGCGGATACATGG TGAGGGGCTTGGTTAACCTGGGGAACACTTGCTTTTTCAATTCCGTAATGCAGAATCTACTAGCTCTGAATAGTTTGAGGAGTTACTTTTTCAGTGAAGA TTCTTCTTATGGTCCTCTTTCTATTTCTTTGAGGAAGCTTTATGATGAAACAAGACAAGAGACAGGTATGAGAAATGTGATTAATCCGCGATCGTTTTTT GCGGGTCTCTGTTCTAAGGCTCCTCAGTTCAGGGGATATCAACAGCATGATAGTCATGAATTATTGCGTTGCTTGCTTGATGCATGGTCCACCGAAGAGT TGGCCAGAAGAAAACAGATCAGCGCATTTGAGCAAAGTGCTGTTTCTGTACCGAATCTTCCTACATTTGTGGATGCTGCGTTTGGAGGACGAATCTCTAG TACTGTATGTTGCATAGAATGTGCACATTCCTCAACTGTCTATGAGCCATTCTTGGACCTTTCTCTTCCAGTTCCAACAAAGAAGCCTCCAACTAAAAAG CTCCAGTCTTTATCTCGAGGAAAGAAGACCAAGCTACCACCAAAGCGAGCTGAAAAAGTTAGGCAAAAAACCAGCAAGGATACAGATCGAATGCATGCTG AGAGTGCCACAAGCTCCTCAACGAGCAATGAATTGGGCCACGAAACGCATTTAGCGACCCCTCTTAATGATAATGCAGCATCTTCCTTGGGTCCTACAGT GCCTGACTCTGCTGGCCGAACTCCCGAGCCTGAAGAAAAGGAGTCGGTACCTAGAAACTTATTGGACACTCATTGTGTGCAAAAGGAAGACCTTGGGGGT GCGCTGGAGCAAACATCATCTTTAGATGAATTTGCATGGATGGATTATCTAGAACCTGAAACTGAAACTATTTCAAACGAGAACGATCTGGCTCTACAAG TTGATGACTTATCAATTCAATATTCACGGGAGCAAGATTTGGGCTCACCGGAGAAAGAGGAGACTCTTCCTTTTGGTCCAGTTCAACAAATCCCATATCC AGAGCCAGACTCATCTTCGATAAATCCTTGGGAAGAGGAAGTCCCGTTGCAGGTCCAAAGCTCTGAAGTTCTGCTGCTTCCTTACTATGAAGAGAGCGTC ACTTGTGGAGAAATTACTGCTGGAGAAGCTGAGGCCTCATCTTCAGTTGTGGGATGTGGACAGGATGAAGCAGCCTTTGACGGCTTTGGTGATATGTTCA ACGAGCCTGAGGTTTTTATAGGCCCTGTTGCAGGGCCTGCTTTAAGCAATGGTCTTACGGCTGGCAATAGCAGCGACTCTGACCCTGGTGAAGTTGATGA CTCTGATTCTCCAGTATCCGTGGAAAGTTGTCTGGCCCACTTTATAAAGCCAGAAATTCTCTCCAATGATAATGCTTGGGAATGTGAGAACTGTTCCAAA ACCGTACACCTCCAGGAGCGGAAGGCAAAGAAGAAGCTGGGAAGAATTGTAGTAGGAGTTTTAAATGGAGGCGAGAGTGAAAGCCAAAATTTAGGCACCT CGTGCTCGTCAGAAAATGCCACAAATGGGGAAGCCATCACAGATGCTCTTTACCATTCCAAAGATGAAAACATAGTTTCTAATGGTGGAGAAAATGATTG CACAAGTGAAATTGTCATGATATCTGAAAACGGTCCAGTGCCACAATGTTGTCCTATTCAGGAAGAATCAGAAAGTCAGGATGGCTCACATACCCGTGGA GTTGATGATTCTGTTTCTACCTGCACTGGAAATACTGCTGCTGTGAATCAAGAGACTCAGTCACAGTCATCTACAAATGTTGAATCAGAAGAAAGTGAAG ACGAAGAGAAAACAATCAAAAAAGTGATTGTGAAGAGGGACGCAACTAAAAGGGTCCTTATTGACAAAGCACCGCCAATACTGACAATACATTTGAAGAG GTTCAGCCAGGATTTTCGTGGACGATTGAGTAAATTGAATGGCCACGTTAACTTTAGAGATCAACTTGATCTTAGACCATACATGGATCCGAGGTGTGAA GATAAAGAGAGGAGTGTGTACCGATTGACAGGGGTCGTTGAACATCTGGGGACAATGCGAGGAGGCCATTATGTTGCATACATAAGAGGAGGAGGAGGAG GAGGAGGGAAGAGCGGTGGTGGTTGCGTATGGTATCACGTGAGCGATTCGTATGTGAGGCAGACTTCGTTGGACGAAGTTATGCGCTGTGAAGCGTACAT CTTATTCTACGAGAGGGTTTGA
AA sequence Show only first row Show all	>Lus10016664 pacid=23143934 polypeptide=Lus10016664 locus=Lus10016664.g ID=Lus10016664.BGIv1.0 annot-version=v1.0 MGKKLKKKGRAPQTQKEKRLVSHSPSKVPHQPNIRLSEDKVSADVVMVPEPRRICAHLEKGFDLTQFTEKINSSDSAECEDCQEAVADRRGGAKGKGKHG KKKGADSKSDSKAIWICLKCGHYACGGVGLPTNSQCHAMRHAKQNGHPLAIQLVNTHLRWCFKCNSFIPADKSEDNDENRDAMSDVVRVIEAHASHTPSV HVKDAWFGSGSVLSEKKPPATVSSSLQGNGGYMVRGLVNLGNTCFFNSVMQNLLALNSLRSYFFSEDSSYGPLSISLRKLYDETRQETGMRNVINPRSFF AGLCSKAPQFRGYQQHDSHELLRCLLDAWSTEELARRKQISAFEQSAVSVPNLPTFVDAAFGGRISSTVCCIECAHSSTVYEPFLDLSLPVPTKKPPTKK LQSLSRGKKTKLPPKRAEKVRQKTSKDTDRMHAESATSSSTSNELGHETHLATPLNDNAASSLGPTVPDSAGRTPEPEEKESVPRNLLDTHCVQKEDLGG ALEQTSSLDEFAWMDYLEPETETISNENDLALQVDDLSIQYSREQDLGSPEKEETLPFGPVQQIPYPEPDSSSINPWEEEVPLQVQSSEVLLLPYYEESV TCGEITAGEAEASSSVVGCGQDEAAFDGFGDMFNEPEVFIGPVAGPALSNGLTAGNSSDSDPGEVDDSDSPVSVESCLAHFIKPEILSNDNAWECENCSK TVHLQERKAKKKLGRIVVGVLNGGESESQNLGTSCSSENATNGEAITDALYHSKDENIVSNGGENDCTSEIVMISENGPVPQCCPIQEESESQDGSHTRG VDDSVSTCTGNTAAVNQETQSQSSTNVESEESEDEEKTIKKVIVKRDATKRVLIDKAPPILTIHLKRFSQDFRGRLSKLNGHVNFRDQLDLRPYMDPRCE DKERSVYRLTGVVEHLGTMRGGHYVAYIRGGGGGGGKSGGGCVWYHVSDSYVRQTSLDEVMRCEAYILFYERV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	0	1
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016663 [exp]	1.0	0.9305
AT1G50380			Prolyl oligopeptidase family p...		Lus10015387 [exp]	3.2	0.8959
AT4G20720			dentin sialophosphoprotein-rel...		Lus10031541 [exp]	4.9	0.8930
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10024704 [exp]	6.9	0.9098
AT1G73180			Eukaryotic translation initiat...		Lus10004803 [exp]	8.5	0.8937
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	9.0	0.8984
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	10.0	0.8963
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10019360 [exp]	10.7	0.8613
AT1G04840			Tetratricopeptide repeat (TPR)...		Lus10020743 [exp]	11.2	0.8418
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10002762 [exp]	11.4	0.8136

Compare expression of checked genes

Lus10016664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.