Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07130 673 / 0 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G32770 578 / 0 PAP13, ATPAP13 purple acid phosphatase 13 (.1.2.3) AT4G13700 485 / 1e-168 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52820 284 / 2e-90 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 281 / 2e-89 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G20500 271 / 2e-85 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52780 268 / 2e-84 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT2G16430 237 / 5e-72 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT1G56360 232 / 4e-70 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT5G34850 217 / 2e-64 ATPAP26, PAP26 purple acid phosphatase 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011847 [exp] 712 / 0 AT3G07130 830 / 0.0 purple acid phosphatase 15 (.1) Lus10016667 [exp] 706 / 0 AT3G07130 788 / 0.0 purple acid phosphatase 15 (.1) Lus10022786 [exp] 706 / 0 AT3G07130 828 / 0.0 purple acid phosphatase 15 (.1) Lus10007119 [exp] 609 / 0 AT3G07130 376 / 1e-127 purple acid phosphatase 15 (.1) Lus10028533 [exp] 595 / 0 AT4G13700 696 / 0.0 purple acid phosphatase 23 (.1) Lus10040079 [exp] 281 / 4e-89 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10017056 [exp] 281 / 4e-89 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10019625 [exp] 278 / 3e-88 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10021376 [exp] 270 / 8e-86 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055800 [exp] 783 / 0 AT3G07130 677 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055900 [exp] 730 / 0 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G243900 [exp] 716 / 0 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.003G176000 [exp] 598 / 0 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.011G138200 [exp] 263 / 2e-82 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 260 / 2e-81 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 256 / 1e-79 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.006G063700 [exp] 242 / 6e-74 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.004G160100 [exp] 241 / 3e-73 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.005G233400 [exp] 240 / 3e-73 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10016665 pacid=23143937 polypeptide=Lus10016665 locus=Lus10016665.g ID=Lus10016665.BGIv1.0 annot-version=v1.0 ATGGTTTACCCCATTGTCGTCTTCCTTCTCCTTCTTCTTCTATGGACCTCCTTACAACACTTTGTCCATGCCAATTTCCCAACCACTCTCCAAGGTCCCT TCAAGCCCATTTCTGCACCTCTTGCTGCTAAATACTTCAATGGCAAGTCAATCGATTTGCCTTCCAATGACTCCCAAGTTGAGAGGACTGTTGAGGGTTT CCAGCCTGAACAAATCTTCCTCTCCCTCTCTTCCAACTACGACTCCGTTTGGGTCTCCTGGGTCACAGGGGATTCCAATGTTGTTTACGACGATCCTGAC TCAGTTGCCAGTGTAGTTCAATATGGGGTTTCCGGGTCACCAATGGACCATAAAGCACATGGCTATTCCCTCGTCTACTCTCAGCTTTATCCTTACGACG GCCTTCATAACTACACATCTGGAATCATACACCACGTTCGCCTCACAGGATTGGAACCTGAAACACTATACCAATATCGATGTGGAGATCCTCACATTCG AGCAATGAGTGATGTGTTCTACTTCAGGACAATGCCAGTTCCTAACCCCACAAATTATCCAGCCAGAATAGCAGTGGTGGGAGATTTAGGACTCACTAGC AATACCAGCACAACAGTGGACCATATTCTCAGCAATCATCCTGATTTGGTTGTCTTAGTTGGGGGTTTAAGTTATGCTGATATGTATCTCACCAATGGAA CTGGCTCTGATTGTTATGCTTGCTCCTTCCCCGACAGTCCTATCCATGAAACTTACCAGCCTCGTTGGGATTACTGGGGAAGGTTTATGCAGCCTCTCAC AGCTAATGTCCCCACAATGGTTACAGGAGGAAAACATGAGATAGAACCACAGGTTGATGATCAGATATTTGTTTCTTACAGCTACAGATTTGCATTCCCG TATGACGAAAGTGGATCATCCTCCCCACTCTATTACTCTTTCAACGCAGGAGGGATACATTTCGTTATACTCAGTCCCTACACTCCTTATGATGGATCAT CTGAGCAGTATCAATGGTTAGAAACAGACCTGTACTATGTAAACAGAAGTCAAACACCATGGCTGGTGGTGGCTTGGCATCCTTCATGGTACACCACATT CAGGGAGCACTACAGAGCTGCTGAATGCATGAGAGTTGAAATGGAGGACTTGCTATACAAATATAGAGTTGACATAGTATTCAATGGCCAAGTCCATGCA TATGAAAGATCTAACCGGGTTTACAACTACAGTCTGGATCCATGTGGTCCAGTTTATATCACTGTGGGAGGTGGCGGGAGCCGAGAAGAGATGGCAACTA CACATGCTGATGATCCTGGTAACTGTCCGGATCCATCTCTTACCCAAGATGCTGATATGGGTGGATACTGCGCCTTCAATTTCACATCAGGACCTTCAGC TGGGAAGTTCTGCTGGGATCACCAGCCTGAGTATAGTGCATACAGAGAAACCAGCTTAGGACATGGGACACTAGAGGTGAAAAATGAGACATATGCTCTG TGGAGTTGGCACAGGAATCTTGAGTTCTATGAATATGCAGGCGATATTGTTTACATAGTTAGAGAACCTGAAAGGTGTCTACCTGCCTAA
AA sequence Show only first row Show all	>Lus10016665 pacid=23143937 polypeptide=Lus10016665 locus=Lus10016665.g ID=Lus10016665.BGIv1.0 annot-version=v1.0 MVYPIVVFLLLLLLWTSLQHFVHANFPTTLQGPFKPISAPLAAKYFNGKSIDLPSNDSQVERTVEGFQPEQIFLSLSSNYDSVWVSWVTGDSNVVYDDPD SVASVVQYGVSGSPMDHKAHGYSLVYSQLYPYDGLHNYTSGIIHHVRLTGLEPETLYQYRCGDPHIRAMSDVFYFRTMPVPNPTNYPARIAVVGDLGLTS NTSTTVDHILSNHPDLVVLVGGLSYADMYLTNGTGSDCYACSFPDSPIHETYQPRWDYWGRFMQPLTANVPTMVTGGKHEIEPQVDDQIFVSYSYRFAFP YDESGSSSPLYYSFNAGGIHFVILSPYTPYDGSSEQYQWLETDLYYVNRSQTPWLVVAWHPSWYTTFREHYRAAECMRVEMEDLLYKYRVDIVFNGQVHA YERSNRVYNYSLDPCGPVYITVGGGGSREEMATTHADDPGNCPDPSLTQDADMGGYCAFNFTSGPSAGKFCWDHQPEYSAYRETSLGHGTLEVKNETYAL WSWHRNLEFYEYAGDIVYIVREPERCLPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016665 [exp]	0	1
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10009282 [exp]	3.6	0.8958
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10000185 [exp]	6.7	0.8323
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10015883 [exp]	8.1	0.8823
AT5G06430			Thioredoxin superfamily protei...		Lus10021764 [exp]	12.8	0.7241
AT3G57930			unknown protein		Lus10031806 [exp]	15.6	0.8363
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10019725 [exp]	22.2	0.6994
AT4G18593			dual specificity protein phosp...		Lus10001888 [exp]	25.1	0.7498
AT3G09870			SAUR-like auxin-responsive pro...		Lus10013819 [exp]	27.5	0.8254
AT1G48460			unknown protein		Lus10032738 [exp]	30.1	0.8357
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10039797 [exp]	34.5	0.7955

Compare expression of checked genes

Lus10016665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.