Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15810 224 / 5e-74 Protein of unknown function (DUF567) (.1) AT1G80120 200 / 9e-65 Protein of unknown function (DUF567) (.1) AT2G38640 83 / 2e-19 Protein of unknown function (DUF567) (.1) AT5G41590 69 / 6e-14 Protein of unknown function (DUF567) (.1) AT1G63410 63 / 7e-12 Protein of unknown function (DUF567) (.1) AT5G01750 60 / 9e-11 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G53880 61 / 2e-10 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53900 61 / 2e-10 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT3G14260 59 / 2e-10 Protein of unknown function (DUF567) (.1) AT3G11740 58 / 4e-10 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007118 [exp] 240 / 6e-81 AT3G15810 191 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 234 / 1e-77 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 167 / 1e-51 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10006656 [exp] 80 / 2e-18 AT3G15810 127 / 7e-37 Protein of unknown function (DUF567) (.1) Lus10014154 [exp] 68 / 1e-13 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10028756 [exp] 67 / 4e-13 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10007423 [exp] 66 / 8e-13 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10017526 [exp] 66 / 1e-12 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10022754 [exp] 62 / 2e-11 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032500 [exp] 241 / 8e-81 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.001G192000 [exp] 238 / 8e-80 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.006G067000 [exp] 187 / 7e-60 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 88 / 5e-21 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.016G143000 [exp] 86 / 2e-20 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.003G133200 [exp] 76 / 2e-16 AT5G41590 207 / 1e-67 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 74 / 8e-16 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.001G098400 [exp] 74 / 9e-16 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1) Potri.003G072200 [exp] 72 / 2e-15 AT3G14260 173 / 2e-54 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 69 / 1e-13 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10016666 pacid=23143930 polypeptide=Lus10016666 locus=Lus10016666.g ID=Lus10016666.BGIv1.0 annot-version=v1.0 ATGAAGGACATCAGCAGCACAGGATTCGTTGTGGACCACGGATTCGTCTACCAGGAAGAGAAGCATTACACCGTTTTCAAAACCTCTCTCTTCTTCGCCA ACGACGGATTCACCGTCTACGACTGCAGTAATGGCGACTTGGTCTTCCGAGTCGACTCCTACGGCCCTGACGCTCGCGACCGAGACGAACTCGTCCTCAT GGATGCCCACGGCCGCTGCTTGCTCACCGTCCGCAAGAAGAGGCCGAGTCTGCATCAGCGGTGGGAAGGATTTCTAGGAGAGAGGAAGGAAGGGCAGAAG GCGATATTCAGCGTGAGGAGGTCGTCGATGATCGGGCGGTCAGGGGTGAGCGTGCAGATGTACGATAATCCAGGGGAGGAGTACGAGATCGAAGGGAGCT ACGGGAGCCGGAGCTGCACAGTGATGGACGTTGCGAGGAGAGCGGTGGTAGCGGAGATCAGACGTAAAGTGGACGCGTCAACAAACGTGGTGCTTGGGAA GGACGTTCTGCTGTTGGCGGTGAAACCGAGGTTTGACGGGGCGTTCGCAATGGGAATGGTGCTGGTTCTGGATCAGATCTGCGGTGGCGATGTGGTTGAT TGCGGTGAAGGAGATGATGGTGATGGCACCGTCAATGTCGAACACGTGGGGAAGGAAGAGGTGATGGGTCGTCGGCCACTAGTTGTGGACTCTGTCCCAC TGGAGCGATAA
AA sequence Show only first row Show all	>Lus10016666 pacid=23143930 polypeptide=Lus10016666 locus=Lus10016666.g ID=Lus10016666.BGIv1.0 annot-version=v1.0 MKDISSTGFVVDHGFVYQEEKHYTVFKTSLFFANDGFTVYDCSNGDLVFRVDSYGPDARDRDELVLMDAHGRCLLTVRKKRPSLHQRWEGFLGERKEGQK AIFSVRRSSMIGRSGVSVQMYDNPGEEYEIEGSYGSRSCTVMDVARRAVVAEIRRKVDASTNVVLGKDVLLLAVKPRFDGAFAMGMVLVLDQICGGDVVD CGEGDDGDGTVNVEHVGKEEVMGRRPLVVDSVPLER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15810			Protein of unknown function (D...		Lus10016666 [exp]	0	1
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Lus10036207 [exp]	6.1	0.9076
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10024832 [exp]	7.6	0.8958
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10042288 [exp]	8.3	0.8474
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10004555 [exp]	8.5	0.8908
AT3G15900			unknown protein		Lus10011486 [exp]	16.9	0.8721
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	18.0	0.8552
AT5G40500			unknown protein		Lus10022273 [exp]	18.5	0.8312
AT5G52960			unknown protein		Lus10039319 [exp]	18.7	0.8682
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10002315 [exp]	22.0	0.8886
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011081 [exp]	27.9	0.8222

Compare expression of checked genes

Lus10016666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.