Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07130 787 / 0 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G32770 587 / 0 PAP13, ATPAP13 purple acid phosphatase 13 (.1.2.3) AT4G13700 531 / 0 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52820 301 / 5e-96 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 298 / 1e-94 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52780 295 / 9e-94 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G20500 293 / 5e-93 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT1G56360 244 / 5e-74 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT2G16430 241 / 2e-72 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT5G34850 232 / 3e-69 ATPAP26, PAP26 purple acid phosphatase 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011847 [exp] 829 / 0 AT3G07130 830 / 0.0 purple acid phosphatase 15 (.1) Lus10022786 [exp] 827 / 0 AT3G07130 828 / 0.0 purple acid phosphatase 15 (.1) Lus10016665 [exp] 706 / 0 AT3G07130 672 / 0.0 purple acid phosphatase 15 (.1) Lus10028533 [exp] 669 / 0 AT4G13700 696 / 0.0 purple acid phosphatase 23 (.1) Lus10007119 [exp] 378 / 5e-127 AT3G07130 376 / 1e-127 purple acid phosphatase 15 (.1) Lus10017056 [exp] 313 / 1e-100 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10040079 [exp] 309 / 7e-99 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10019625 [exp] 307 / 2e-98 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10021376 [exp] 303 / 2e-97 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055900 [exp] 903 / 0 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G243900 [exp] 833 / 0 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055800 [exp] 734 / 0 AT3G07130 677 / 0.0 purple acid phosphatase 15 (.1) Potri.003G176000 [exp] 673 / 0 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.011G138200 [exp] 300 / 1e-95 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 296 / 4e-94 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 284 / 3e-89 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.005G233400 [exp] 252 / 1e-76 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.004G160100 [exp] 249 / 1e-75 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.006G063700 [exp] 248 / 5e-75 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10016667 pacid=23144004 polypeptide=Lus10016667 locus=Lus10016667.g ID=Lus10016667.BGIv1.0 annot-version=v1.0 ATGACAGCCGGCGGCTTCTTCCTCCAACTGAAAAGCACCTTCTTCACTCTCTCTCCCCTTATTCTTCCTTCTATCCTTTCTCTCTATAATGTCTTCCTCT TCCCGCAATCACCTCCTCTCTCTTTTAAATACCATCCTTCTGCTTCATATAATAATAATGCTTCCTCATCTCTCTTCCCTCCTTCCCGCCCAAATCTCAG CTTCTTCCTCCAGATGTATTTCATCTCGAGATTTCCTTCCTCTCTCCCTTTTCTCATTCTCGCGGTGAATAGCTTCTTCTTCTCAGCAATCGTAGAGGGC ATACCCTCCACTCTGGATGGACCATTCAAGCCCGTCACTATCCCTCTAGACAAAAGCTTTCGTGGCTACGCCGTCGACTTGCCGGACTCCGATCCTCGGG TTCAGAGGAAGGTCGTGGGTTTTGCTCCTGAGCAGATATCGTTATCTCTCTCTGCAAACTATGACTCGGTTTGGGTTTCTTGGATTACAGGTGATTATCA GATTGGGGATGAGATTGAACCGTTGGACCCTAAAAGTGTAGCAAGTTTGGTCAAATATGGAAGCTCCAACTCCTCATTGACCAATGTAGTTACTGGGGAA TCCCTTATTTACAGTCAGCTTTACCCTTTTGAAGGTCTCCAGAACTACACCTCTGGAATCATTCACCACGTCCTTCTCCAAGGGTTGAAGCCGAGTACTG TTTACTTCTATCAATGTGGGGATCCTTCCATATCAGCAATGAGTGATGTATACTCCTTCAAGACTATGCCGGATTCAGGTCCCCAGAGTTACCCTACAAA GATAGCAATTGTGGGAGACCTGGGTCTGACTTACAACACAACTTCAACAGTTGATCATATGGTCAGCAACAATCCGGATCTTATTCTACTGGTTGGAGAT GTTAGTTATGCCAACTTGTATCTTACTAACGGAACTGGGGCAGACTGCTACTCCTGTGCCTTTCCAGACAGTCCTATTCATGAAACTTATCAGCCTCGTT GGGATTACTGGGGAAGGTATATGCAGCCCGTGATATCTAGGATTCCAATAATGGTGATTGAAGGGAACCATGAAATAGAAGAGCAGGTTGAAAAGAAGGC ATTTGTGGCTTATAGCTCTCGTTTTGCATTTCCATCGGAAGAAAGTAAATCACACTCCACCATGTACTACTCTTTCAACGCCGGAGGGGTACATTTCATA ATGCTGGGTTCCTACATTGCTTACCATAAAAAAGGACATCAATACAAGTGGTTGAAGAAAGATCTAGCAAGAGTGGACAGAAGAGTGACTTCGTGGGTGG TGGCTACGTGGCATGCACCTTGGTACAGCAGCTATGCAGCACACTATAGAGAAGCAGAGTGCATGAAGGTAGCAATGGAAGACTTGCTGTACAAGCATGG GGTGGATATGGTCTTTAACGGACACGTACATGCATATGAGAGATCAAACCGTGTTTACAACTATGCATTGGATCCTTGTGGCCCGGTTTACATAACTGTT GGTGATGGTGGTAACCGAGAAAAGATGGCGATCCCACATGCTGATGAACCCGGTAATTGCCCTGATCCGGCCAGCACACCAGATACTTACATGAAAGGTT TTTGTGCATTCAACTTTACATCAGGGCCGGCTCAAGGAAAGTTCTGTTGGGACCGGCAGCCAGAGTACAGTGCATACAGGGAGTCTAGCTTCGGACATGG AATTCTGGAGGTGAAGAATGAGACTCATGCTTTGTGGACATGGCACCGGAATCAGGACATGTACAATGCTCCAGGGGATCAGCTTTACATTGTGAGGCAG CCCAACAAGTGCCCGATTAAATCAAAGAGGAATGCAAGAACAGACAACCCTGAGAACCAAAGATAG
AA sequence Show only first row Show all	>Lus10016667 pacid=23144004 polypeptide=Lus10016667 locus=Lus10016667.g ID=Lus10016667.BGIv1.0 annot-version=v1.0 MTAGGFFLQLKSTFFTLSPLILPSILSLYNVFLFPQSPPLSFKYHPSASYNNNASSSLFPPSRPNLSFFLQMYFISRFPSSLPFLILAVNSFFFSAIVEG IPSTLDGPFKPVTIPLDKSFRGYAVDLPDSDPRVQRKVVGFAPEQISLSLSANYDSVWVSWITGDYQIGDEIEPLDPKSVASLVKYGSSNSSLTNVVTGE SLIYSQLYPFEGLQNYTSGIIHHVLLQGLKPSTVYFYQCGDPSISAMSDVYSFKTMPDSGPQSYPTKIAIVGDLGLTYNTTSTVDHMVSNNPDLILLVGD VSYANLYLTNGTGADCYSCAFPDSPIHETYQPRWDYWGRYMQPVISRIPIMVIEGNHEIEEQVEKKAFVAYSSRFAFPSEESKSHSTMYYSFNAGGVHFI MLGSYIAYHKKGHQYKWLKKDLARVDRRVTSWVVATWHAPWYSSYAAHYREAECMKVAMEDLLYKHGVDMVFNGHVHAYERSNRVYNYALDPCGPVYITV GDGGNREKMAIPHADEPGNCPDPASTPDTYMKGFCAFNFTSGPAQGKFCWDRQPEYSAYRESSFGHGILEVKNETHALWTWHRNQDMYNAPGDQLYIVRQ PNKCPIKSKRNARTDNPENQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	0	1
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10012689 [exp]	1.7	0.8466
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10011119 [exp]	5.9	0.8318
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10001819 [exp]	6.5	0.8427
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031883 [exp]	8.1	0.8058
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	8.1	0.8344
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10022523 [exp]	10.6	0.8232
AT4G23900			Nucleoside diphosphate kinase ...		Lus10001824 [exp]	12.1	0.7908
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10028526 [exp]	14.3	0.8337
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10034716 [exp]	14.4	0.8205
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10030133 [exp]	15.0	0.8045

Compare expression of checked genes

Lus10016667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.