Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08690 123 / 3e-36 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G56150 121 / 2e-35 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT5G41700 119 / 7e-35 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT1G64230 119 / 1e-34 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 119 / 1e-34 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT2G16740 118 / 2e-34 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT4G27960 118 / 3e-34 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT3G08700 111 / 1e-31 UBC12 ubiquitin-conjugating enzyme 12 (.1) AT3G13550 103 / 4e-28 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) AT1G78870 94 / 9e-25 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007126 [exp] 255 / 6e-88 AT3G08690 148 / 4e-46 ubiquitin-conjugating enzyme 11 (.1.2) Lus10028700 [exp] 124 / 1e-36 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 124 / 1e-36 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10014187 [exp] 119 / 2e-34 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 119 / 2e-34 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10032352 [exp] 118 / 4e-34 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10039323 [exp] 117 / 6e-34 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 117 / 6e-34 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 117 / 8e-34 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055300 [exp] 132 / 3e-39 AT5G56150 183 / 9e-60 ubiquitin-conjugating enzyme 30 (.1.2) Potri.011G168200 [exp] 123 / 2e-36 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G083800 [exp] 123 / 4e-36 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.001G471200 [exp] 122 / 8e-36 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 120 / 6e-35 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 119 / 1e-34 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 119 / 1e-34 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.016G138900 [exp] 119 / 1e-34 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.001G094900 [exp] 117 / 7e-34 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.012G033000 [exp] 117 / 8e-34 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10016670 pacid=23143967 polypeptide=Lus10016670 locus=Lus10016670.g ID=Lus10016670.BGIv1.0 annot-version=v1.0 ATGGCCCTTTTCTCTGGGCTCAAACTTTTCAGTAGCAAATCCTCCATCAGGAAATCAAAAAAGACCACAACAGAGCGCAGACTCAACAAGGAAATAAAGC GGGCAAGAGATCACAACATTCCATCCCACTGCAGCTTTGGACCTGCTGAAGATGGTGATGACATCTACAAGCTTCAAGGTGCCATATTTGGTCCAGCTCA AACACCTTATGAAGGTGGTGTCTTCCTCTTGTCCATCCGTATTCCCAAAAGCTACCCTTTCACCCCTCCAAAGATCAACTTCATCACCAAGGTTTATCAC CCAAACGTCAGACGAGATGGGAGGATTGAAGTGGATATTCTGGGGAATAACTGGACACCTGCCTTGACAATTGAGAAGCTGTTACTGTCAATTTGCTCAC TGCTTCCAGACCCAGATCCTGATGCTGATTCTCCACTCAATAATCCTGCTGCTGCCCTCTATCTATCTGATCTCAAATCTTTCAACAGGAAAGCCAGGGA ATGGACTCTCAAATATGCAATTCTCTGA
AA sequence Show only first row Show all	>Lus10016670 pacid=23143967 polypeptide=Lus10016670 locus=Lus10016670.g ID=Lus10016670.BGIv1.0 annot-version=v1.0 MALFSGLKLFSSKSSIRKSKKTTTERRLNKEIKRARDHNIPSHCSFGPAEDGDDIYKLQGAIFGPAQTPYEGGVFLLSIRIPKSYPFTPPKINFITKVYH PNVRRDGRIEVDILGNNWTPALTIEKLLLSICSLLPDPDPDADSPLNNPAAALYLSDLKSFNRKAREWTLKYAIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Lus10016670 [exp]	0	1
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10007126 [exp]	1.0	0.9222
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Lus10027701 [exp]	2.8	0.9031
					Lus10033310 [exp]	4.2	0.8955
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	4.5	0.8914
AT3G61920			unknown protein		Lus10002686 [exp]	5.8	0.8619
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	6.3	0.8854
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10020389 [exp]	7.1	0.8766
AT2G46550			unknown protein		Lus10023163 [exp]	7.4	0.8744
AT4G15960			alpha/beta-Hydrolases superfam...		Lus10038649 [exp]	7.7	0.8723
AT1G13970			Protein of unknown function (D...		Lus10030425 [exp]	9.5	0.8264

Compare expression of checked genes

Lus10016670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.