Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04880 363 / 4e-122 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G76110 250 / 1e-79 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT3G13350 209 / 5e-64 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G55650 196 / 9e-59 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT2G17410 56 / 4e-08 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G20910 54 / 8e-08 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1) AT1G76510 51 / 8e-07 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT4G11080 45 / 0.0001 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007127 [exp] 768 / 0 AT1G04880 376 / 3e-127 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10021228 [exp] 244 / 5e-77 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10005636 [exp] 157 / 4e-44 AT1G76110 273 / 2e-90 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10001618 [exp] 50 / 2e-06 AT2G17410 395 / 4e-129 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10022981 [exp] 50 / 2e-06 AT2G17410 395 / 1e-128 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10016045 [exp] 49 / 6e-06 AT1G76510 374 / 1e-126 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10008495 [exp] 45 / 0.0001 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10023091 [exp] 41 / 0.001 AT4G11080 279 / 1e-92 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055200 [exp] 457 / 5e-159 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.001G315200 [exp] 429 / 1e-148 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.005G246700 [exp] 263 / 1e-84 AT1G76110 350 / 2e-120 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G168800 [exp] 248 / 3e-79 AT3G13350 307 / 3e-104 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G145450 [exp] 58 / 6e-09 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.002G003700 [exp] 56 / 3e-08 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.004G208900 [exp] 55 / 6e-08 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G456500 [exp] 53 / 3e-07 AT2G17410 420 / 3e-139 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G093700 [exp] 43 / 0.0003 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.003G138000 [exp] 42 / 0.0006 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10016671 pacid=23144012 polypeptide=Lus10016671 locus=Lus10016671.g ID=Lus10016671.BGIv1.0 annot-version=v1.0 ATGAGAGACGCGGTCGTCAATTATATTCGGTATCCAGCTGCTGTAGCCGAATATGAGGATGTCAAAAACAATCCTAGGATATTTATGGCTAGTTTGGAGA AGTTCCATTTGTCTATGGGAACTAAGTTCATGATCCCCATAATAGGGGGAAGAGATTTGGACTTGCATCGCCTCTTTGTGGAGGTAACACAACGTGGTGG TATTCATAAGATACTTAGAGAGAAAAGATGGAAAGAAGTAACAGCCACTTTCAACTTCCCCTCTACCGCAACAAATGCATCTTTTGTGTTGCGCAAGTAC TACGGATCCTTGCTTCTTCACTATGAACAGCTCTACTTTTTCAAAGCTCAGGGCTGGAATCCTGCCACGGCAGCTCCTCTACATACCCCTTGGGTGGGAC AGGTTCCAGTTCAAAGTTCTGTGCTGCCATCACCTCAATACCAAGCACCACCAATAAATGTTGCTGAACTTCCTCGAGCTAGGGCAGAATCAGCAACAGG GCCTTCGGTCATTGGTGTAATTGATGGGAAGTTTGATGGTGGTTATCTTGTAACTGTCACAATAGGGAACGAGAGACTGCAAGGTCTGCTTTATCAGGCA GCAGAAGGTCAGCATTCCCAGATGTCTCAGCATTATCCTAGTATGTTATCCAACAACAATGGCATCGATCATGCTGTACCACCACCTTGTAAACGAAGAA GACGCAGGAAGAAGTGCGAGATAAAAAGGAGGGATCCTGACCATCCAAAACCTAACAGAAGTGGTTACAACTTCTTCTTTGCTGAGCAGCACGCAAGACT AAAACAACTTCATACAGGGAAAGACAGAGAAATTAGCCGGATGATTGGAGAACTATGGAACAAGCTCAAGGATGGGGAAAGATCTGTTTATCAAGAGAAA GCTATGAAAGATAAAGAAAGATACAGATCAGAGATGGAGGGTTACAGGGACAGACTGAGAACAGGACAATCGGCTAGCGAGGCAGTTCCATTGGCTCAAT GGCAGCCTGTCCAAGATGTAGATATGATGGAAACTGATCTCAACACTGCTGGAACAGAAGGTATGGATAATGACAGCAGCAGTTATGTTGAGGTTGATTC TGATGACGAGGATGAATTGGAGGAGGACGAGAAGAACATGGACGAAGAAAACTTGGACCGGGGAGAATTTGCAGTCCATGGATTAGGTGTTGGTTCATGC AATTTGGGTTTGGAGGTTTCAGCTGACCCATCTAGCAGAGAGATAGGCAGCAAAATTGAAGATAAGACAGGTGAGAAGAAATTGGAGGATATGTCATCTG TCGAAGCAAATAAGGAAAGTGTTACAGGAACAGGAGCATGA
AA sequence Show only first row Show all	>Lus10016671 pacid=23144012 polypeptide=Lus10016671 locus=Lus10016671.g ID=Lus10016671.BGIv1.0 annot-version=v1.0 MRDAVVNYIRYPAAVAEYEDVKNNPRIFMASLEKFHLSMGTKFMIPIIGGRDLDLHRLFVEVTQRGGIHKILREKRWKEVTATFNFPSTATNASFVLRKY YGSLLLHYEQLYFFKAQGWNPATAAPLHTPWVGQVPVQSSVLPSPQYQAPPINVAELPRARAESATGPSVIGVIDGKFDGGYLVTVTIGNERLQGLLYQA AEGQHSQMSQHYPSMLSNNNGIDHAVPPPCKRRRRRKKCEIKRRDPDHPKPNRSGYNFFFAEQHARLKQLHTGKDREISRMIGELWNKLKDGERSVYQEK AMKDKERYRSEMEGYRDRLRTGQSASEAVPLAQWQPVQDVDMMETDLNTAGTEGMDNDSSSYVEVDSDDEDELEEDEKNMDEENLDRGEFAVHGLGVGSC NLGLEVSADPSSREIGSKIEDKTGEKKLEDMSSVEANKESVTGTGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10016671 [exp]	0	1
AT4G10810			unknown protein		Lus10010114 [exp]	10.1	0.8577
AT4G27660			unknown protein		Lus10015578 [exp]	13.0	0.7852
AT5G49600			Protein of unknown function, D...		Lus10017087 [exp]	13.1	0.8408
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014359 [exp]	14.4	0.8833
AT1G02816			Protein of unknown function, D...		Lus10009855 [exp]	14.6	0.7645
AT1G30320			Remorin family protein (.1)		Lus10023284 [exp]	16.9	0.8778
					Lus10004247 [exp]	17.1	0.7970
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10041877 [exp]	25.2	0.7645
AT3G13898			unknown protein		Lus10008387 [exp]	25.7	0.8674
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032098 [exp]	26.9	0.8686

Compare expression of checked genes

Lus10016671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.