Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18670 107 / 8e-24 Ankyrin repeat family protein (.1) AT5G04690 84 / 2e-16 Ankyrin repeat family protein (.1) AT5G35810 81 / 6e-16 Ankyrin repeat family protein (.1) AT5G04700 82 / 9e-16 Ankyrin repeat family protein (.1) AT5G04730 80 / 4e-15 Ankyrin-repeat containing protein (.1) AT3G54070 76 / 4e-14 Ankyrin repeat family protein (.1) AT5G04680 66 / 1e-10 Ankyrin repeat family protein (.1) AT4G14390 58 / 2e-08 Ankyrin repeat family protein (.1) AT1G34050 55 / 2e-07 Ankyrin repeat family protein (.1) AT2G31820 53 / 7e-07 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003282 [exp] 627 / 0 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10014701 [exp] 314 / 5e-96 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10000489 [exp] 306 / 2e-94 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10000916 [exp] 197 / 1e-54 AT1G03670 52 / 1e-06 ankyrin repeat family protein (.1) Lus10014030 [exp] 138 / 2e-33 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10019887 [exp] 135 / 2e-32 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10038357 [exp] 113 / 2e-25 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10027721 [exp] 110 / 6e-25 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10035567 [exp] 80 / 2e-15 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048832 [exp] 521 / 8e-174 AT3G18670 195 / 2e-53 Ankyrin repeat family protein (.1) Potri.002G048666 [exp] 288 / 3e-83 AT5G04700 181 / 3e-47 Ankyrin repeat family protein (.1) Potri.004G003401 [exp] 162 / 2e-41 AT5G35810 154 / 2e-41 Ankyrin repeat family protein (.1) Potri.004G003600 [exp] 142 / 8e-35 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Potri.011G015750 [exp] 133 / 3e-33 AT3G18670 144 / 1e-37 Ankyrin repeat family protein (.1) Potri.011G016300 [exp] 134 / 1e-32 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.006G281600 [exp] 134 / 1e-32 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.011G016000 [exp] 129 / 4e-32 AT3G18670 137 / 2e-35 Ankyrin repeat family protein (.1) Potri.006G281800 [exp] 130 / 4e-31 AT3G18670 139 / 7e-35 Ankyrin repeat family protein (.1) Potri.011G019750 [exp] 130 / 5e-31 AT3G18670 135 / 3e-33 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016672 pacid=23143931 polypeptide=Lus10016672 locus=Lus10016672.g ID=Lus10016672.BGIv1.0 annot-version=v1.0 ATGGCTGGTGGAGATGGGTTGTTTGAGAAGGTGATGAAAGGGAGGTGGAACGAAATTCTTGATGTTGATGCAGTGAATCTAAGTGAAAAGATCACCCAGT CTGAAGACACTGCATTGCACATAGCTGTGATGAACGGCAAAACTGATGTTGTGGTCCGGCTAGTTGCCAACATGAAAGGGATGGCTTGCAGCATCCTGAA AACCAAGAACGTGAGAGGAAACACAGCTCTCCATCTAGCTGCATCCATTGGGGATGTTGAGATGTGCCGTTCCATTGCTTGCAGAGATTGGTCTCTCATT ACTGAAGTCAACAATGATGGCGAGACCCCTCTGTTCCTCGCGTCTTTGCAAGGCAAGAAAGGTGCTTTCTTCACCCTCCGTTCCTTCGCTGAGGGTAACC TCGATGACAAGTATAAGCTTTGCAGAAGGTTCGATGGAAATACCATTCTTCATTCTGCTATCTACGGTGAACACTTTGGCTTGGCGTTGGAGATAATAAA ATACTATCCGAATCTTGTGAACTCTGTCAATGAGACGGGGTCAACCCCTCTCCATGTCCTTGCTATGAAACCGACTTCATTCGCCAGCAATTGCCACCTT GGCCTGTTTGATCGCACCGTTTACTACTTTACGGTTGTTGATGAAGAGGAGGAAGAAAGAGAGTATCTACTGACTAATTTGAACCACCGACAAGGGAAAA CATCCAAATACCCAGCTTCCTATGAATCCTGTCTGACCTTCATCCAATTAACGAAGAACCTGATTGGAATAGCAAATAGGGTATCTCGACCGTTTCCACC CTTGCCTGGTCACAGAAAAGGCAGTAGTAGTGATGTTGAAAACCCCAGAAACAGACCCCGCATATCTCAAGGTACTGAAACAGACTCAAAGGGTCAAATC CGCAGTGCTGAAAATCAACAAACAAATAATGGTGTCGGCTTAGAGGGGCAAGGAAAAAGGAAAGGAATTTTTCCTCCCAATTATGAAACCAGTATTATGC TTGGCAAGTACATAATGAATGTTCTGCTAGTTATTCTTGGACTAGGCCTGTGGAGGATAAACAAAATCAAAGAGAAGAAAACGATTCACAAGTTGGCTAC TGAAGTCATGAATGTACTAGTTGAGAAAGCTTCATTGTACCGATATGATTCAACTGGCCGGAAACCTTTCGGAGATAAAGATGATTCTGGGTTCGAATTC CTTACGGACATTCCTGAAAGCCCTGAATCCCTTATACCTTCAAGCCTTGATCAGATATTAAATGCAGACAATAGTGGGGAGATGATGCGCTTGCAGCCAG AAAGCGCAGCTATCAAGGAAGCACCGCAGAAAAGACTTCTTCATAGAGATGAAACCTTGATAATGAGGCCTGACGATATACGTGGCACTGAAAGTGAAGG ACCAGTTTCTCCAAAACTTACAGGTAACGCTTTAGTAGCAGAAAGGCTGATTGACATGGTAGAGGCTCTGACGAAAACGATTCAAGAACTTAAAACAGAT ACACGGAATGGTGATGATGAGAAGAAAGAGAGCATCCAAACTGTGAGAGAGACTCCTATACTGACAGCAGCTAAAACTGGGGTGACAGAGATAGTGGAGA AGATACTTGATACATTTCCTGTGGCAATCCATGACTTGGATTCTGATTCCAAAAACGCTGTGTTGTTGGCAGTTGAGCACAGGCAAATACAGGTGTTTAA AATGCTAACTAAGAAGACAATATTAAAGGAGAGTGTTTTCAGTCAGCTGGACAAAGATGGAAACAGCGCATTGCATCTGGCTGCAACTTTTGGTGACTAT CGCCCTTGGCTCATTCCAGGTGCTGGCTTACAAATGCAATGGGAAATCAAGTGGTACCATTTTGTTGAGCATTCAATGCCAGAAAGCTTCTTTGCGCAAT ACAATAGGCAAGGCCTAAACCCAAAGCAGATCTTCACTGAGACTCACAAGGACTTGGCGAAAACTGGAAGCGAGTGGCTTACAAAGACGTCAGAGTCATG CTCTGTGGTTGCAGCACTCATAGCCACAGTTGCATTTGCAACTGCATCAGCGGTGCCCGGAGGAAACAAGGAAGAAAACGGTGCTCCCATCCTCCAAGAT GTGCCTGTATTCAATGTCTTTGCAATCTCATCTCTCGTTGCTCTCTGCTTCTCTGTGACGTCCCTTTTGGTGCTTCTTACCATTATCACCTCACGATTTG AGCAACGAGACTTCGACAAGAAGCTTCCAAGGACGCTTCTTTTAGGCCTAACCTCACTCTTCCTCTCCATTGTTTCCATCTTAATATCCTTTTGTGCAGG TCATGTGTTCGTTCTCAAAGATAACTTAAGATTCATCTCCCTCCCAATATATGCTGCAACTTGCTTCCCAGTGGCCCTCTTTCTCATTGCACAGCTATCC CTTTACTTCGATCTCATGAAGGCTATTTTCTCAGACCAGCCTCAGCGCAGCTTCAAAGAGATACGCCACTAA
AA sequence Show only first row Show all	>Lus10016672 pacid=23143931 polypeptide=Lus10016672 locus=Lus10016672.g ID=Lus10016672.BGIv1.0 annot-version=v1.0 MAGGDGLFEKVMKGRWNEILDVDAVNLSEKITQSEDTALHIAVMNGKTDVVVRLVANMKGMACSILKTKNVRGNTALHLAASIGDVEMCRSIACRDWSLI TEVNNDGETPLFLASLQGKKGAFFTLRSFAEGNLDDKYKLCRRFDGNTILHSAIYGEHFGLALEIIKYYPNLVNSVNETGSTPLHVLAMKPTSFASNCHL GLFDRTVYYFTVVDEEEEEREYLLTNLNHRQGKTSKYPASYESCLTFIQLTKNLIGIANRVSRPFPPLPGHRKGSSSDVENPRNRPRISQGTETDSKGQI RSAENQQTNNGVGLEGQGKRKGIFPPNYETSIMLGKYIMNVLLVILGLGLWRINKIKEKKTIHKLATEVMNVLVEKASLYRYDSTGRKPFGDKDDSGFEF LTDIPESPESLIPSSLDQILNADNSGEMMRLQPESAAIKEAPQKRLLHRDETLIMRPDDIRGTESEGPVSPKLTGNALVAERLIDMVEALTKTIQELKTD TRNGDDEKKESIQTVRETPILTAAKTGVTEIVEKILDTFPVAIHDLDSDSKNAVLLAVEHRQIQVFKMLTKKTILKESVFSQLDKDGNSALHLAATFGDY RPWLIPGAGLQMQWEIKWYHFVEHSMPESFFAQYNRQGLNPKQIFTETHKDLAKTGSEWLTKTSESCSVVAALIATVAFATASAVPGGNKEENGAPILQD VPVFNVFAISSLVALCFSVTSLLVLLTIITSRFEQRDFDKKLPRTLLLGLTSLFLSIVSILISFCAGHVFVLKDNLRFISLPIYAATCFPVALFLIAQLS LYFDLMKAIFSDQPQRSFKEIRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18670			Ankyrin repeat family protein ...		Lus10016672 [exp]	0	1
AT5G66900			Disease resistance protein (CC...		Lus10007359 [exp]	2.2	0.9328
AT5G36930			Disease resistance protein (TI...		Lus10007813 [exp]	2.8	0.9231
AT5G40100			Disease resistance protein (TI...		Lus10000329 [exp]	4.2	0.9227
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	9.8	0.9052
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	12.0	0.8885
AT4G19500			nucleoside-triphosphatases;tra...		Lus10006907 [exp]	12.3	0.8195
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	13.0	0.8987
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Lus10012927 [exp]	13.6	0.8561
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Lus10034999 [exp]	16.6	0.8474
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10007233 [exp]	18.2	0.8812

Compare expression of checked genes

Lus10016672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.