Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13630 207 / 7e-59 Protein of unknown function, DUF593 (.1.2) AT4G13160 108 / 3e-26 Protein of unknown function, DUF593 (.1) AT1G04890 103 / 2e-23 Protein of unknown function, DUF593 (.1) AT1G70750 81 / 1e-15 Protein of unknown function, DUF593 (.1) AT5G16720 77 / 3e-14 Protein of unknown function, DUF593 (.1) AT3G54740 72 / 3e-13 Protein of unknown function, DUF593 (.1.2) AT5G06560 68 / 8e-12 Protein of unknown function, DUF593 (.1) AT2G30690 67 / 2e-11 Protein of unknown function, DUF593 (.1) AT1G18990 64 / 2e-10 Protein of unknown function, DUF593 (.1) AT1G74830 59 / 7e-09 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007129 [exp] 1013 / 0 AT4G13630 160 / 7e-42 Protein of unknown function, DUF593 (.1.2) Lus10011854 [exp] 108 / 1e-24 AT4G13630 199 / 1e-56 Protein of unknown function, DUF593 (.1.2) Lus10022791 [exp] 107 / 2e-24 AT4G13630 200 / 2e-57 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 87 / 3e-17 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 76 / 4e-14 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10015990 [exp] 75 / 6e-14 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10029342 [exp] 74 / 1e-13 AT5G06560 473 / 4e-163 Protein of unknown function, DUF593 (.1) Lus10012288 [exp] 73 / 3e-13 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10016203 [exp] 72 / 7e-13 AT5G06560 475 / 2e-164 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055100 [exp] 255 / 9e-75 AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2) Potri.002G242900 [exp] 219 / 2e-62 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.016G065200 [exp] 69 / 6e-12 AT5G06560 517 / 4e-180 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 69 / 8e-12 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.017G129200 [exp] 68 / 1e-11 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 67 / 2e-11 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 67 / 2e-11 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 67 / 2e-11 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.006G199000 [exp] 67 / 3e-11 AT5G06560 523 / 0.0 Protein of unknown function, DUF593 (.1) Potri.019G012200 [exp] 65 / 1e-10 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10016673 pacid=23143963 polypeptide=Lus10016673 locus=Lus10016673.g ID=Lus10016673.BGIv1.0 annot-version=v1.0 ATGGCGTGTCAAGAGGTAGAATCATGGACATTTAGTGGGCTGGTGGCCGCATTTCTGGACCTTGCAATTGCATACATGTTCCTCTCTGCATCAACAGTTG CTTATTTCGCATCCAAATTTCTATCTCTAATTGGGTGGTCTCTGCCTTGCTCTTGTAATCACGAATCCGGAAACTGCTGGCCGAGGTTTCTACTCGATAA TCCCTTTCATAGCATATCAAATGTTGAATCATCTATCAGGAGGAGGCTCCCTTTTGATTTGTTGCTCGACGAAGAAGAAATCCGGGAATTCGCCCTTGGT GGAGCTGCTGGATTGGAGGTTGAAAGGTCTTGTAACTCATTACGGTTGAAGAATGTTGGTGCTATGGGGGTTTCTGAGACTACTATTGACAACATCTCCG CGGGGGAGATGCTGGAGAAGAAATTTGATATGGCTAAGAAAAGATTGAAGGCGAAATGCTGCCATCGCAGAAGGCGTGCTGTTGAAGATGGGACAATGCC TGAAGTTCCACCTTATTACTCTTCTTCTTCTTCACAACCAAATGTGCGGATTCCTCCCTTGCATCCTCCAAATGGGAGTAAGGTGGTCAATACAGTTACT GGAGGCAAGATGCTTCCTGCTACCTCTTGTGTTGCTACTGCACAAGATGATGCAGGTTCTTCTACAGACCATATTGAATCAACTGTAGGTAGTGATGAAG GTAAAGAGACGGCGAAAGATGTCTATCCTAGTGATGACTCGAAATCCAATGACGATGCCAATGCTGATGATGAGAGGAATACTCTTCGAGTCTTGGAACA AGCATTAGAAGAAGAACGAATTGCTCGTTTGGCTTTATGTCAGGAGCTCGAACAAGAGAGAAACGCTGCTGCATCTGCTGCCGATGAGGCCATTGCGATG ATTCTACGGCTTCAAGAGGAGAAGGCATCAGTAGAGATGGCAGCCAGGCAATACCAGAGGATGATTGATGAAAAGTCGGCCTATGATCATGAAGAGATGA GCATTTTGGAGGAGATGCTTCTGAAGAGGGAGAGGGAAAATCATTTCCTGGAGAATGAACTTGAGGCTTACAAGATGATGAGTTTGGGGAACGCGCAGTT GGATTCTGGTGTGTCGGACATTGATACCGTGCCTGGGTATGGGGCTTCTTTCTCTCAATATTCAAGTGAAGATCCTTCCTTACCGTGGCAGAAAGTCTTG GAGAAACAAGATGCACAGAATGGAGACCTTGGTTATCAAGTTAAATCTACAATGCCAAGTTCTAATCTGGTTTTTCAGGAAGGTGAAGGAGCCAATAGCA TCAAAAATATCAACGAGGAACTAAAAAAGAAAGAAGAGAACTGTGGGTTTGATCATCTGGAAACTGCTTCGTTAGTTAACCATATAGGCGAACCAACAAT CGAGAAAAACATTCATGGTAAGAGTCAGGATACAGCATCTGGTGTAAGGCCTTTTGTTCAAGATGTTCACACCATTGAGGATAAATCCAAGAAAAGCAAC CAAACAACTGACAAGGGTAGTGAAAAGCTCCCATTTTATCCTGCATTCAGCATTCCAAGAACTGGTGATAATCAAGCATTTAGCAAATTAGAACCAGATA ATAGCTTTGGAAAAAGCAGTTATGATGCAGCTAGCGGGTTGCCACCAATTGGTAGCTCGAGGAGCCGCCCACAGCCTATTAGGCGAAGAAATTCCATGTC TGCAGCTGATTTCGAAATATCTAAGATAGACTATGAAGTAGGTTGGTTAAGAGAGAGACGAAAGATTGTGAAGGAAGGGAGAGAAAAGCTCAACATTCCC ACTGGTTTGAAGGGAAAGGATAAGGTTCAATTGCAGAACATGGAGAAAATTGTGGGCAAACTTCGAGAGATCCAACAGTTGTCGGAACCTGGAAATGCTG TTCGGCAGGTGTTGTTAACCCCTCCTCTATCTGGCAGGGTATGA
AA sequence Show only first row Show all	>Lus10016673 pacid=23143963 polypeptide=Lus10016673 locus=Lus10016673.g ID=Lus10016673.BGIv1.0 annot-version=v1.0 MACQEVESWTFSGLVAAFLDLAIAYMFLSASTVAYFASKFLSLIGWSLPCSCNHESGNCWPRFLLDNPFHSISNVESSIRRRLPFDLLLDEEEIREFALG GAAGLEVERSCNSLRLKNVGAMGVSETTIDNISAGEMLEKKFDMAKKRLKAKCCHRRRRAVEDGTMPEVPPYYSSSSSQPNVRIPPLHPPNGSKVVNTVT GGKMLPATSCVATAQDDAGSSTDHIESTVGSDEGKETAKDVYPSDDSKSNDDANADDERNTLRVLEQALEEERIARLALCQELEQERNAAASAADEAIAM ILRLQEEKASVEMAARQYQRMIDEKSAYDHEEMSILEEMLLKRERENHFLENELEAYKMMSLGNAQLDSGVSDIDTVPGYGASFSQYSSEDPSLPWQKVL EKQDAQNGDLGYQVKSTMPSSNLVFQEGEGANSIKNINEELKKKEENCGFDHLETASLVNHIGEPTIEKNIHGKSQDTASGVRPFVQDVHTIEDKSKKSN QTTDKGSEKLPFYPAFSIPRTGDNQAFSKLEPDNSFGKSSYDAASGLPPIGSSRSRPQPIRRRNSMSAADFEISKIDYEVGWLRERRKIVKEGREKLNIP TGLKGKDKVQLQNMEKIVGKLREIQQLSEPGNAVRQVLLTPPLSGRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13630			Protein of unknown function, D...		Lus10016673 [exp]	0	1
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Lus10042632 [exp]	4.2	0.8828
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10016091 [exp]	38.1	0.8102
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	38.1	0.8143
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10042088 [exp]	42.8	0.8069
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	44.7	0.8125
AT2G33360			Protein of unknown function (D...		Lus10023729 [exp]	44.9	0.6967
AT3G28420			Putative membrane lipoprotein ...		Lus10039459 [exp]	56.8	0.7695
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	60.2	0.8017
AT5G42710			unknown protein		Lus10016315 [exp]	63.6	0.8051
AT2G33360			Protein of unknown function (D...		Lus10014479 [exp]	64.4	0.7830

Compare expression of checked genes

Lus10016673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.