Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32800 509 / 9e-168 AP4.3A protein kinase family protein (.1) AT3G53810 254 / 2e-73 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 251 / 3e-72 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 247 / 6e-71 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59270 241 / 7e-69 Concanavalin A-like lectin protein kinase family protein (.1) AT1G15530 241 / 9e-69 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 239 / 5e-68 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 238 / 2e-67 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 237 / 4e-67 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 234 / 2e-66 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007130 [exp] 834 / 0 AT2G32800 977 / 0.0 protein kinase family protein (.1) Lus10016506 [exp] 272 / 8e-80 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 270 / 4e-79 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004710 [exp] 249 / 4e-75 AT3G55550 486 / 7e-169 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014037 [exp] 257 / 2e-74 AT1G15530 807 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 257 / 2e-74 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 254 / 3e-73 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10022662 [exp] 252 / 2e-72 AT5G01550 651 / 0.0 lectin receptor kinase a4.1 (.1) Lus10004982 [exp] 250 / 9e-72 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315000 [exp] 579 / 0 AT2G32800 930 / 0.0 protein kinase family protein (.1) Potri.017G055000 [exp] 563 / 0 AT2G32800 559 / 0.0 protein kinase family protein (.1) Potri.009G035701 [exp] 262 / 4e-77 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 257 / 2e-74 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 256 / 5e-74 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 255 / 8e-74 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.012G084900 [exp] 253 / 2e-73 AT1G15530 734 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 253 / 8e-73 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.015G083300 [exp] 251 / 1e-72 AT1G15530 759 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G123300 [exp] 246 / 1e-70 AT5G01550 629 / 0.0 lectin receptor kinase a4.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10016674 pacid=23143929 polypeptide=Lus10016674 locus=Lus10016674.g ID=Lus10016674.BGIv1.0 annot-version=v1.0 ATGCATCTCAACCGCCTTTGCATCGTTCTTCCCACCGACTTCGACGACAAACCCGACAAGCCGATCCCCTCCGATCACCATCTCAAGCTAGACCAAACTC CCCGGAGCCGAGGCTGCGGCCATCACATCATTTCCTTAGTCAGCGGGTCGGTCAGACGGTTATACGGCTCCAAATGGGTCACCTCCTGTCGTCCGAAGCA GCAGTCAGAAAACAACAAGTACGCCTCCTCCGGGTCCTTATCCGCTGCGTTTCACGACTCTGAAGGAGTTCAGATAGCTGACCACCGGGTCGGGTACGAC AATCCACGGATCTTCAGCTATTCTGAGCTCTATATCGGCTCCAACGGCTTCAGCGATGCCGAGATTCTCGGGAGTGGGGGTTTCGGCAAGGTTTACAGTG CGGCTCTCCCCAGCGATGGAACTCTGGTCGCCGTTAAATGTTTGTCTGAGAGAGGGGAACAGTTCGATAAGACCTTCGCCGCCGAGTTGGTCGCCGTGGC TCACCTCCGCCACCGGAATCTAGTCCGATTGAGAGGATGGTGCGTGTACGAAGACCAGTTGCTTCTGGTCTACGACTACATGCCCAATCGCAGCCTGGAT CGCGTCCTTTTCCGGAAATCCGAAAACCTAACGACGGCGTCAGCTGAACCTTCCCCTCGGATACTCGATTGGGAGCAGAGGAAGAATATTGTAGCCGGAT TGGCGGCGGGGTTGCATTACCTCCATGACCATCTCGAGACCCAAATCATTCACCGCGACGTCAAAGCCAGCAACGTCATGCTGGATTCCAATTACAACGC TAGGCTGGGCGATTTTGGGCTGGCCAGGTGGCTGGAGCACGAATTGGAGTACGGTGTCAGAACCCCGTCGATGAGGGGGAACCCCCAATTCCGGGTCACC GAATCAACCCGAATCGGCGGCACGATCGGGTACCTCCCACCTGAGAGTTTCCAGAAAAGAAGCTTCGCCACCGCGAAATCCGACGTTTTCAGCTTCGGAA TCGTCCTTCTGGAGGTCGTCTCCGGGAGAAGGGCGGTGGATTTGGCATATCCGGATGATCAGATTGTTCTCCTCGATTGGGTCCGGGAGCTTTCCGACGC GAGGAACGTTCTTCAGGCGGGTGACACCAGGCTTAAAGACGGGTCTTACCGGCTAATCGAAATGGAAAGGATGGTCCATCTGGGTCTCCTCTGTACACTT CACAATCCTCACTATCGTCCCAATATGAAATGGGTAGTGGAAGCACTTTCCGGCGGCGGGAGCTCTGGAGGCAAATTGCCGCCGCTTCCATCTTTCCAGG CTCATCCACGGTACATATCGATCTCCTCCGGCAGCAACACCACCGCCACCAACACTACAGCCACAACTAGGAGCAGCAGCAGAAGCAGAAGCTCCAAATC CAGCACCGCGACAACAACAACAACAACAACAACAACGGTAATCTCGATTTCAGCGACTTATGCGACTGCTATAGAGGAAACCATTTATGAAACCGCGGAA TTTCAGAACAGTTTTACTGGTGGTGGTGATGCTGGCAATTATAATTACGGCAACAAAAGTTCTGTGTACGGTAGCAGAAGATGCGGACCTGCTTCCTTCA TGGTGGAAACTCCTAGGGAGATATCATTCAAGGAAATAATAGCTGCCACTAACAACTTCTCAGACTCCAATAGACTAGCAGAAGTTGATTTTGGAACTGC TTACTATGGTGTCCTTGAAGATGGGCACCAAGTTCTTGTAAAGAGGCTGGGAATGACTCAGTGCCCTGCATTGAGGACTAGATTCTCCGATGAGCTTCAG AACTTGGGCAGGCTTCGCCACCGCAATCTGATACAGCTTCGAGGATGGTGTACCGAGCAAGGAGAGATGCTTGTCATCTATGATTATTCTCCCAGCCGAT TGTTGAGTCACAAACTCTTCCATCACAAGCTAGGCGCCATTCTGCAATGGAGGCATAGGTACAACATCGTCAAGTCACTGGCTTCAGCGGTTCTCTACCT TCATGAAGAGTGGGATGAACAAGTGATCCACAGGAACATAACGTCCTCTTCTGTTATTCTTGATTTGGATATGATCAACCCGAGGCTGAGCAACTTTGCG CTTGCTGAGTTCCTCCACAGGAATGATCATGCTCATCAGGAAGCTACCAAGGGGAACAACAAATCGGTCAGGGGAATTTTCGGCTACATGTCCCCCGAGT ACATGGAATCGGGGGAAGCAACGACGATGGCGGATGTTTATAGCTTTGGAGTGGTGGTGCTTGAGGTTGTTAGTGGACAGATGGCCGTTGATTTTCGTAG ACCAGAGGTTCTGTTGGTGAATAGAGTGAATGAATTTGAGGCACATGATAAACCGGTTGAGGAACTGGTTGACGCGAGGTTGGATGGTGAGTATGAGAGT AAAGAAGTGATGAGGTTAGTGAAGTTGGGGAGAGCATGTACGAGGTCCGATCCCGGGTTAAGACCAAGAATGAGGCAGATAGTGAGCATTCTGGATGGGA ATGATCAATGGTTATTGGTGGAAGGACAGCAGAAGAAGGAAAGCAGGAAGGAATGGAAGAAGAAGAATGCTTCTTCATTGTCACTGGTGAAGAGAATCCA AGCGCTAGGTATTCAATGA
AA sequence Show only first row Show all	>Lus10016674 pacid=23143929 polypeptide=Lus10016674 locus=Lus10016674.g ID=Lus10016674.BGIv1.0 annot-version=v1.0 MHLNRLCIVLPTDFDDKPDKPIPSDHHLKLDQTPRSRGCGHHIISLVSGSVRRLYGSKWVTSCRPKQQSENNKYASSGSLSAAFHDSEGVQIADHRVGYD NPRIFSYSELYIGSNGFSDAEILGSGGFGKVYSAALPSDGTLVAVKCLSERGEQFDKTFAAELVAVAHLRHRNLVRLRGWCVYEDQLLLVYDYMPNRSLD RVLFRKSENLTTASAEPSPRILDWEQRKNIVAGLAAGLHYLHDHLETQIIHRDVKASNVMLDSNYNARLGDFGLARWLEHELEYGVRTPSMRGNPQFRVT ESTRIGGTIGYLPPESFQKRSFATAKSDVFSFGIVLLEVVSGRRAVDLAYPDDQIVLLDWVRELSDARNVLQAGDTRLKDGSYRLIEMERMVHLGLLCTL HNPHYRPNMKWVVEALSGGGSSGGKLPPLPSFQAHPRYISISSGSNTTATNTTATTRSSSRSRSSKSSTATTTTTTTTTVISISATYATAIEETIYETAE FQNSFTGGGDAGNYNYGNKSSVYGSRRCGPASFMVETPREISFKEIIAATNNFSDSNRLAEVDFGTAYYGVLEDGHQVLVKRLGMTQCPALRTRFSDELQ NLGRLRHRNLIQLRGWCTEQGEMLVIYDYSPSRLLSHKLFHHKLGAILQWRHRYNIVKSLASAVLYLHEEWDEQVIHRNITSSSVILDLDMINPRLSNFA LAEFLHRNDHAHQEATKGNNKSVRGIFGYMSPEYMESGEATTMADVYSFGVVVLEVVSGQMAVDFRRPEVLLVNRVNEFEAHDKPVEELVDARLDGEYES KEVMRLVKLGRACTRSDPGLRPRMRQIVSILDGNDQWLLVEGQQKKESRKEWKKKNASSLSLVKRIQALGIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32800		AP4.3A	protein kinase family protein ...		Lus10016674 [exp]	0	1
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10013040 [exp]	2.0	0.8921
AT4G04960			Concanavalin A-like lectin pro...		Lus10025441 [exp]	3.2	0.8912
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10037447 [exp]	3.5	0.8641
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10041451 [exp]	4.9	0.8950
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10010403 [exp]	5.6	0.9133
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10017510 [exp]	9.5	0.8744
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	19.1	0.8495
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	24.1	0.8942
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10036571 [exp]	26.1	0.8297
AT3G57450			unknown protein		Lus10042063 [exp]	29.4	0.8412

Compare expression of checked genes

Lus10016674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.