Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24110 191 / 2e-60 Calcium-binding EF-hand family protein (.1) AT4G26470 174 / 9e-54 Calcium-binding EF-hand family protein (.1.2) AT4G04695 65 / 7e-12 CPK31 calcium-dependent protein kinase 31 (.1) AT2G41100 65 / 7e-12 ATCAL4, TCH3 TOUCH 3, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, Calcium-binding EF hand family protein (.1.2.3.4) AT4G04700 59 / 7e-10 CPK27 calcium-dependent protein kinase 27 (.1) AT3G50360 57 / 1e-09 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT3G51920 56 / 1e-09 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT5G04870 58 / 2e-09 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT4G04720 57 / 2e-09 CPK21 calcium-dependent protein kinase 21 (.1) AT1G50700 57 / 3e-09 CPK33 calcium-dependent protein kinase 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007131 [exp] 162 / 2e-50 AT3G24110 76 / 2e-25 Calcium-binding EF-hand family protein (.1) Lus10008357 [exp] 156 / 9e-47 AT4G26470 290 / 6e-100 Calcium-binding EF-hand family protein (.1.2) Lus10027114 [exp] 78 / 1e-17 AT4G26470 165 / 6e-52 Calcium-binding EF-hand family protein (.1.2) Lus10009176 [exp] 62 / 7e-12 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3) Lus10008958 [exp] 64 / 2e-11 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10006777 [exp] 62 / 8e-11 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10016200 [exp] 62 / 9e-11 AT2G38910 868 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10028862 [exp] 62 / 1e-10 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10020046 [exp] 61 / 2e-10 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314900 [exp] 325 / 4e-113 AT3G24110 216 / 1e-70 Calcium-binding EF-hand family protein (.1) Potri.001G471100 [exp] 187 / 5e-59 AT4G26470 331 / 3e-116 Calcium-binding EF-hand family protein (.1.2) Potri.017G054902 [exp] 128 / 5e-37 AT3G24110 70 / 3e-15 Calcium-binding EF-hand family protein (.1) Potri.010G244800 [exp] 65 / 1e-11 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 63 / 4e-11 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.003G134000 [exp] 61 / 1e-10 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.001G097400 [exp] 61 / 2e-10 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.001G257100 [exp] 61 / 3e-10 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.009G052700 [exp] 59 / 5e-10 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.011G003400 [exp] 58 / 1e-09 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016675 pacid=23143955 polypeptide=Lus10016675 locus=Lus10016675.g ID=Lus10016675.BGIv1.0 annot-version=v1.0 ATGTTTTGCCATCTGGGTTCTGCAAACAAATACAAGAGGCTGGATGCAAAGCTAGAAAAGAAGATTGTTGAAATTAAGAGAGCTTCTTCTACTACTACTA CTTCTTCAGGGACTAAAACCTTTAAATCCATAAACACTATAATCATGAGGTTCCCACAATTCAAAGAACAGCTCAAAGACATCAATGGCGTTTTTGAACA GTTTGGTAACAAAGTTACATTCTTTTCTCTTCTTCTTCTGGTCTCTGCTTCTCCAGCCAAAAGTTCTCATCTTTATCATAATGTGTTCCTACCATCAGAT GAAGATGGAAACGGCACAATTGATCTCAAAGAACTCAAGAAATGCATAAAGAAACTGGACCTTAACCTCAAGGACTCTGACGTTGATGATCTGTTCCATT CCTGTGATTTTGATGGAAGTGGAGGGATTCAGTTCAACGAGTTCATTGTCCTTCTCTGTCTCATTTATCTCTTAACAGAATCGTCTTCATCTCCTCAGAA TAGTTCAAGGATGGGCTCACCAGAGCTGGAGGCAACTTTTGACACAGTTGTTGAAGCATTCTTGTTCCTTGACAAGAATGGAGATGGGATGTTGAACAAG AAAGACTTGGTGAATGCTTTGAACGATGCTTCCCCATGGGAGAAATCCCCCTTGCGGATCACCAAGTCTAGATTCAAGGAAATGGACCGAGACAGAAATG GGAAGGTCAGCTTCAGGGAGTTCTTGTTTGCACTGATCCAATGGGTTGGCATTGATGCTGATCAAGATATCCCAGTCACTGCAACTTAG
AA sequence Show only first row Show all	>Lus10016675 pacid=23143955 polypeptide=Lus10016675 locus=Lus10016675.g ID=Lus10016675.BGIv1.0 annot-version=v1.0 MFCHLGSANKYKRLDAKLEKKIVEIKRASSTTTTSSGTKTFKSINTIIMRFPQFKEQLKDINGVFEQFGNKVTFFSLLLLVSASPAKSSHLYHNVFLPSD EDGNGTIDLKELKKCIKKLDLNLKDSDVDDLFHSCDFDGSGGIQFNEFIVLLCLIYLLTESSSSPQNSSRMGSPELEATFDTVVEAFLFLDKNGDGMLNK KDLVNALNDASPWEKSPLRITKSRFKEMDRDRNGKVSFREFLFALIQWVGIDADQDIPVTAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24110			Calcium-binding EF-hand family...		Lus10016675 [exp]	0	1
AT1G13920			Remorin family protein (.1)		Lus10037111 [exp]	7.2	0.8806
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10022608 [exp]	8.4	0.8735
AT5G14890			NHL domain-containing protein ...		Lus10014529 [exp]	8.7	0.8627
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10031386 [exp]	15.5	0.8650
AT1G27180			disease resistance protein (TI...		Lus10007831 [exp]	20.2	0.8633
AT2G20362			unknown protein		Lus10022860 [exp]	20.7	0.8560
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10017204 [exp]	21.8	0.8567
AT1G76770			HSP20-like chaperones superfam...		Lus10028577 [exp]	21.9	0.8620
AT2G20362			unknown protein		Lus10024963 [exp]	24.5	0.8606
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006186 [exp]	25.0	0.7854

Compare expression of checked genes

Lus10016675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.