Plant FIBer expression Database

Lus10016677 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04900 560 / 0 Protein of unknown function (DUF185) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007135
[exp]
728 / 0 AT1G04900 532 / 0.0 Protein of unknown function (DUF185) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G314700
[exp]
592 / 0 AT1G04900 682 / 0.0 Protein of unknown function (DUF185) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF02636 Methyltransf_28 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence
>Lus10016677 pacid=23143999 polypeptide=Lus10016677 locus=Lus10016677.g ID=Lus10016677.BGIv1.0 annot-version=v1.0
ATGGCGTCTTTTCGTTCCAACAAGCTGTCGTGTTTCTTTCACTCTCACAAAGTGGTTTCCCATTGTCCTATAAAACGTTCATCTGGAGCTCTATTTTCCA
CAAGCATTGTTGGGGATAAGCCAATTCTGGTTAGGGATTTCATACATTCCGCCTTGTATGATCCAGACCATGGCTACTTCTCTCAGAGGTCAAGATCAGT
TGGAGTATTGGAAAAAAGCATCAAGTTCGAGCGGCTTCAAGGGAGGGAAGCTTATGTGAAGCACTTGGATAAAGTCTATAAGCAGAGTGATGTGTCATGG
TTTACTCCAGTAGAGCTCTTCAAGCCTTGGTATGCTTATGGAATTGCTGCGGCAATTATGCGTTCGGCTAACTTTTCAGTCCCACTAAAAATATATGAAA
TCGGGGGTGGATCAGGAACTTGTGCAAAGGGCATAATGGATTACATTATGTTGCACGCACCAGCACGAGTGTACAACAATATGACTTATACCTCAGTTGA
AATCAGTTCGTCACTGGCTGAAATCCAGAAGGCAACTGTGGGAGAGGTTCACATGCCAAAATTTAGAGTAGAACGTCGTGATGCTGCTGACCGTAGTGGA
TGGGGTATGATACTTGTAATTGTTGCTTTTGATTTATGTAGCATCTTCTTGATAGGAGAGGCATGTCAACAGCCGTGTTGGGTGGTAATGCTTGAGAAAG
TCAGGATTCACCGTGGAAAGAAGTATGGATTCAAAAGCAAGAAAATGGGTAGTTGGAAACGGACACTTCTCTTTTCTGCATTTACGGAAACTCTGTCTGA
GTTGTTCAAGCCACTACAAGACCCATTGATCAAGCGCTGTGTTGATATCATGGCATCCAACGATGAGTCCGTCTCAATATTGAGAAAAATGTGGTTTAAG
CTTTTTTCAAAACCTCGAAGATGTTGGTTGCCTACTGGCTGCTTGAAACTACTGGAGGTGCTACATGAGGCATTACCAGTGATGTCCTTAATTGCTTCAG
ACTTTAGTTACCTGCCTGATGTGACTATACCAGGGGTGAGGGCACCTTTGGTCTCAACCAAGAAAGATGGTCAGAGCTCAGATTACAAAAGTTATCTAGA
CGCAAAGGGTGATGCTGATATATTTTTCCCAACGGATTTCTGGCTGTTGGAAAGGATGGACCACTACTGTTCTGGTCTGAAACTTAGCAAAGCCAAATCA
TCCAAGCAAGTAAAGAAAAGACGAACGCTTGCACTTAACACTTCAATGTTCATGGAGGAGTTTGGTTTGCACACGAAGACGAGAACCAAGGATGGATACA
ACCCATTGCTGGAGGACTTCACTAATACAAAGTTCTATATTAGTGTTCCAACGCATAACATCATGAAGTAG
AA sequence
>Lus10016677 pacid=23143999 polypeptide=Lus10016677 locus=Lus10016677.g ID=Lus10016677.BGIv1.0 annot-version=v1.0
MASFRSNKLSCFFHSHKVVSHCPIKRSSGALFSTSIVGDKPILVRDFIHSALYDPDHGYFSQRSRSVGVLEKSIKFERLQGREAYVKHLDKVYKQSDVSW
FTPVELFKPWYAYGIAAAIMRSANFSVPLKIYEIGGGSGTCAKGIMDYIMLHAPARVYNNMTYTSVEISSSLAEIQKATVGEVHMPKFRVERRDAADRSG
WGMILVIVAFDLCSIFLIGEACQQPCWVVMLEKVRIHRGKKYGFKSKKMGSWKRTLLFSAFTETLSELFKPLQDPLIKRCVDIMASNDESVSILRKMWFK
LFSKPRRCWLPTGCLKLLEVLHEALPVMSLIASDFSYLPDVTIPGVRAPLVSTKKDGQSSDYKSYLDAKGDADIFFPTDFWLLERMDHYCSGLKLSKAKS
SKQVKKRRTLALNTSMFMEEFGLHTKTRTKDGYNPLLEDFTNTKFYISVPTHNIMK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G04900 Protein of unknown function (D... Lus10016677
[exp]
0 1
AT1G62330 O-fucosyltransferase family pr... Lus10015558
[exp]
5.5 0.7090
AT1G48310 CHR18, CHA18 chromatin remodeling factor18 ... Lus10039409
[exp]
9.3 0.7472
AT4G27080 ATPDI7, ATPDIL5... ARABIDOPSIS THALIANA PROTEIN D... Lus10040029
[exp]
9.8 0.6842
AT4G38120 ARM repeat superfamily protein... Lus10033267
[exp]
10.2 0.7320
AT3G14400 UBP25 ubiquitin-specific protease 25... Lus10013726
[exp]
11.0 0.7367
AT2G19170 SLP3 subtilisin-like serine proteas... Lus10001006
[exp]
15.0 0.6856
AT3G55080 SET domain-containing protein ... Lus10040345
[exp]
16.0 0.7206
AT3G13690 Protein kinase protein with ad... Lus10006148
[exp]
22.6 0.6847
AT2G14520 CBS domain-containing protein ... Lus10020494
[exp]
26.1 0.6506
AT1G22660 Polynucleotide adenylyltransfe... Lus10026711
[exp]
28.6 0.7060

Lus10016677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.