Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18990 357 / 4e-123 Pectin lyase-like superfamily protein (.1) AT3G24130 355 / 3e-122 Pectin lyase-like superfamily protein (.1) AT2G47280 286 / 4e-95 Pectin lyase-like superfamily protein (.1) AT2G19150 265 / 7e-87 Pectin lyase-like superfamily protein (.1) AT5G47500 227 / 1e-71 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT2G21610 224 / 1e-70 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT2G36710 221 / 5e-69 Pectin lyase-like superfamily protein (.1) AT1G05310 219 / 4e-68 Pectin lyase-like superfamily protein (.1) AT5G19730 209 / 9e-65 Pectin lyase-like superfamily protein (.1) AT5G26810 206 / 1e-64 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007136 [exp] 560 / 0 AT3G24130 348 / 2e-119 Pectin lyase-like superfamily protein (.1) Lus10000936 [exp] 391 / 5e-137 AT3G24130 308 / 2e-104 Pectin lyase-like superfamily protein (.1) Lus10000935 [exp] 392 / 4e-136 AT3G24130 313 / 4e-105 Pectin lyase-like superfamily protein (.1) Lus10031421 [exp] 246 / 1e-73 AT5G26820 669 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10004720 [exp] 218 / 5e-68 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10026347 [exp] 216 / 1e-67 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10040541 [exp] 215 / 3e-67 AT3G17060 471 / 7e-168 Pectin lyase-like superfamily protein (.1) Lus10037774 [exp] 214 / 8e-67 AT3G17060 468 / 2e-166 Pectin lyase-like superfamily protein (.1) Lus10010912 [exp] 224 / 9e-66 AT5G26820 648 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054700 [exp] 361 / 1e-125 AT3G24130 378 / 2e-132 Pectin lyase-like superfamily protein (.1) Potri.004G033700 [exp] 300 / 1e-100 AT5G18990 298 / 8e-100 Pectin lyase-like superfamily protein (.1) Potri.005G012800 [exp] 291 / 4e-97 AT5G18990 281 / 1e-93 Pectin lyase-like superfamily protein (.1) Potri.013G008100 [exp] 250 / 4e-82 AT5G26810 256 / 3e-85 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 225 / 2e-71 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.008G104800 [exp] 225 / 5e-71 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 217 / 1e-67 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 211 / 4e-65 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 209 / 9e-65 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 206 / 1e-63 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10016678 pacid=23144001 polypeptide=Lus10016678 locus=Lus10016678.g ID=Lus10016678.BGIv1.0 annot-version=v1.0 ATGGGGGTTACTCAAGTCATGAATAGTGCTAGCTTTCAATTGTGGCTACGTGTAACTATTTTTACTCTGTTGTTTGGCATCTCTCAGTCACGGCCAATTT CATTGAGTAGGCCGCCAATATCCCCCTATCCTTCCACGTTGTCACAGAGACATTATTGGACATTGGTAGTGGACCAGTCTGGCCATGGCGATTTCACTAC AGTTCAATCTGCCATCGACTCTGTCCCTTCAAATAATAGGTATTGGATTTGCATCCAACTCAAGGCCGGAATATATAGGGAAAAGGTGACGATTCCTGTA GATAAACCCTACATAATTCTCAAAGGGGAAGGCAGAAGATACACTTCGATCGTGTGGGATGATCACTCCTCAACCTCACAAAGCCCTACCTTCACCTCCA TAGCTGACAATATCATTGTCAAGCGCATTAGCTTTGTGAACTCATACAACTACCCAGTGAATAAGAACCGGAAAATGCCGGCGGTGGCAGCTCGGGTAAA AGGGGACAAGACATCTTTCTACGGGTGCGGGTTTGTTGGTGTTCAAGACACGCTGTGGGATTCTGAGGGGAGGCACTACTTCAAGAGGTGCAGTATTGAA GGTGCAGTGGACTTCATATTTGGTGGTGGCCAATCTATTTACGAGGACTGTGAGATAAGGGTGAACGGAAGAGGATACATAACAGCACAAGGAAGAGAGA GCCCTGAGGATACAGGTGGGTTCGTGTTCAAAGGATGCACTGTTACAGGGATTGGTGTTGGTCCGATGATGACCTTTTTGGGGAGGGCATGGAGGAAGTA CGCGAGGGTGCTGTTTTACAAGTCGAATTTAACAGACGTCGTGGATCCAAAGGGCTGGGATTCCTGGAACGTTAGCCCGTATCAAGTGACGTACGCTGAG TACGGGAACTACGGAGCAGGAGCTGATACATCGAGGAGGGTGAAGTGGTTAAAGTGGCTTCCGATTGAGACGTGGGAGGAGATGACCAGCATCTCTTACG TCAGTGACAACGGATGGCTTCAACGCCAACCATATTAG
AA sequence Show only first row Show all	>Lus10016678 pacid=23144001 polypeptide=Lus10016678 locus=Lus10016678.g ID=Lus10016678.BGIv1.0 annot-version=v1.0 MGVTQVMNSASFQLWLRVTIFTLLFGISQSRPISLSRPPISPYPSTLSQRHYWTLVVDQSGHGDFTTVQSAIDSVPSNNRYWICIQLKAGIYREKVTIPV DKPYIILKGEGRRYTSIVWDDHSSTSQSPTFTSIADNIIVKRISFVNSYNYPVNKNRKMPAVAARVKGDKTSFYGCGFVGVQDTLWDSEGRHYFKRCSIE GAVDFIFGGGQSIYEDCEIRVNGRGYITAQGRESPEDTGGFVFKGCTVTGIGVGPMMTFLGRAWRKYARVLFYKSNLTDVVDPKGWDSWNVSPYQVTYAE YGNYGAGADTSRRVKWLKWLPIETWEEMTSISYVSDNGWLQRQPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24130			Pectin lyase-like superfamily ...		Lus10016678 [exp]	0	1
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10023732 [exp]	1.0	0.9988
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10012489 [exp]	9.8	0.9949
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10013573 [exp]	14.6	0.9937
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	15.2	0.9955
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10017279 [exp]	16.1	0.9884
AT5G16023		RTFL18, DVL1	DEVIL 1, ROTUNDIFOLIA like 18 ...		Lus10003079 [exp]	17.0	0.9812
AT4G34760			SAUR-like auxin-responsive pro...		Lus10028466 [exp]	17.4	0.9954
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10028893 [exp]	21.0	0.9797
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008639 [exp]	21.7	0.9953
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	24.3	0.9953

Compare expression of checked genes

Lus10016678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.