Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24140 278 / 4e-89 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 143 / 7e-39 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 136 / 2e-36 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46810 137 / 3e-36 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 135 / 9e-36 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 128 / 1e-34 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 129 / 6e-34 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G46690 116 / 6e-29 bHLH bHLH071 beta HLH protein 71 (.1) AT5G53210 89 / 3e-19 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65320 75 / 1e-14 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007139 [exp] 415 / 3e-142 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029950 [exp] 147 / 8e-40 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 142 / 1e-39 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012603 [exp] 136 / 1e-37 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007138 [exp] 133 / 8e-37 AT3G24140 124 / 2e-34 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 134 / 3e-35 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001271 [exp] 122 / 4e-31 AT1G72210 194 / 1e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009475 [exp] 121 / 1e-30 AT1G72210 199 / 8e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010503 [exp] 113 / 2e-28 AT3G06120 191 / 4e-61 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314400 [exp] 276 / 2e-88 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 266 / 2e-84 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G025900 [exp] 167 / 1e-47 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 159 / 1e-44 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G039800 [exp] 158 / 4e-44 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G106300 [exp] 156 / 5e-43 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G180300 [exp] 151 / 3e-41 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G202900 [exp] 140 / 3e-39 AT3G06120 250 / 5e-85 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G141100 [exp] 142 / 1e-38 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1) Potri.007G097600 [exp] 137 / 1e-36 AT1G72210 167 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10016680 pacid=23143946 polypeptide=Lus10016680 locus=Lus10016680.g ID=Lus10016680.BGIv1.0 annot-version=v1.0 ATGGTGGTGAGTTTGAGGAGCTTCCAACTCACAAACTGTGACTTCTCCATTAAACCCCCCCAGGCTCCTCCTCCTTCACTCAGCTTCTATGCAAGTTTCA CAGAGCAGCTAGATGAGGAGCAACACCACTATCCTCCCTTCTCCGGCTCCCACCATTCTCAATCATCCTATCACCATCATCATGAATTACTGATGAAGCC TCCACCGCCACGCCAGATGCTTCTCGAAACCACTACTACTACCTCTACCAACAACAACATGGATCACTTGATGTTCAATACAAACAACCAATCCTCCTCA TCCTCATCCTCAATCATATCCCCCGGGTTCGACAAGCTCATGAGCTTTGCTGACGTCATGCAGTTTGCAGATTTCGGCCCTAAACTCTCCCTAAACCAGA AGATGATCACTCCTCCACCCACCAACGCTGCCGATCCGGTATACTTCCTCAAGTTCCCCGTCCTCAACGACTGGGAGGGTGACAACAACGACGACCCACA ATTAGGAATGATTTCTTTGTCATCACCACCAGCACCACTAGAAGCAGTTCATCCTCCTCCTCCTCCTCCAATGAAGATGCAGAGGTTTGATGTCGACGTG GATGACACCACAACAAACAACAACAACAACAACAATGGCCAATTAGAAGATCATCAGTACCATCATCATCATCATGACGAAAACAACAAGAATGGGGGCG GAGGTGATGACAACGTTGTAGTAGTGGAAGTAGGAGGTAATAAGAACAAGAGGAAACGGACAAGGAGCGTGAAGACGAGCGAGGAGGTCGAGAGCCAGAG GATGACTCATATCGCTGTCGAGAGGAATCGTAGGAAGCAAATGAATGAACACCTCCGCGTCCTTCGTTCCCTAATGCCTGGCTCCTACGTTCAAAGGGGA GACCAAGCGTCGATAATAGGAGGGGCGATAGAATTCGTGAGGGAATTGGAGCAGCTACTCCAATGCCTGGAGTCTCAGAAGAGGAGGCGCCTCTACGGGG ATCAGCCACCCCAGACTCAGACACAGAGGCTTGTTCAGAATAATAATAAGAACATTAATAATGATGATGATGAGCAGCAGCAGCAGTTAATGATGATGAA TTTGGAATCGGGAGGGTTATTAGTGGAGGAAAGTATGGCTGAGAACAAGTCGTGTCTTGCTGACGTGGAGGTTAAGCTGTTAGGGTTCGATGCTATGATT AAGGTTTTGTCGAGGAGGAGACCGGGTCAGCTGATTAAGGCCATTGCTGCTTTGGAGGATTTGCAGCTTACAATCCTTCACACCAACATCACTACCATTG AGCAAACTGTGCTTTATTCCTTCAACGTCAAGGTTGCAAGTGAGGGCACAATATTGACGGCAGAAGAGATAGCAGGATCCGTCCAACAGATATTTACCTT CATTCATACCAACGGCAGCATGTGA
AA sequence Show only first row Show all	>Lus10016680 pacid=23143946 polypeptide=Lus10016680 locus=Lus10016680.g ID=Lus10016680.BGIv1.0 annot-version=v1.0 MVVSLRSFQLTNCDFSIKPPQAPPPSLSFYASFTEQLDEEQHHYPPFSGSHHSQSSYHHHHELLMKPPPPRQMLLETTTTTSTNNNMDHLMFNTNNQSSS SSSSIISPGFDKLMSFADVMQFADFGPKLSLNQKMITPPPTNAADPVYFLKFPVLNDWEGDNNDDPQLGMISLSSPPAPLEAVHPPPPPPMKMQRFDVDV DDTTTNNNNNNNGQLEDHQYHHHHHDENNKNGGGGDDNVVVVEVGGNKNKRKRTRSVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRG DQASIIGGAIEFVRELEQLLQCLESQKRRRLYGDQPPQTQTQRLVQNNNKNINNDDDEQQQQLMMMNLESGGLLVEESMAENKSCLADVEVKLLGFDAMI KVLSRRRPGQLIKAIAALEDLQLTILHTNITTIEQTVLYSFNVKVASEGTILTAEEIAGSVQQIFTFIHTNGSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10016680 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Lus10025911 [exp]	1.4	0.9006
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10041806 [exp]	4.5	0.8818
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10011358 [exp]	6.7	0.8724
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	6.9	0.8508
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008897 [exp]	7.7	0.8340
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008999 [exp]	8.1	0.8450
AT4G34770			SAUR-like auxin-responsive pro...		Lus10038192 [exp]	8.4	0.8458
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10023208 [exp]	9.5	0.8266
					Lus10021443 [exp]	10.6	0.8024
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010713 [exp]	11.5	0.8134

Compare expression of checked genes

Lus10016680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.