Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68150 178 / 3e-51 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT1G18860 154 / 2e-41 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT5G15130 151 / 7e-40 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT4G04450 149 / 2e-39 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT4G22070 147 / 2e-38 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT1G62300 146 / 3e-38 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G01720 145 / 3e-38 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT1G69810 117 / 5e-29 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT4G31800 105 / 6e-25 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT2G04880 101 / 4e-23 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035971 [exp] 459 / 2e-159 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1) Lus10024246 [exp] 157 / 4e-41 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10021554 [exp] 154 / 5e-41 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10023615 [exp] 154 / 8e-41 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10022959 [exp] 152 / 3e-40 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10015546 [exp] 146 / 2e-39 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10035286 [exp] 149 / 5e-39 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10037205 [exp] 142 / 5e-37 AT5G15130 225 / 2e-67 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10036725 [exp] 141 / 7e-37 AT5G15130 227 / 6e-68 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G208600 [exp] 184 / 3e-52 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.015G064100 [exp] 157 / 9e-42 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.004G007500 [exp] 152 / 5e-40 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.017G079500 [exp] 149 / 3e-39 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.014G155100 [exp] 147 / 3e-38 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.002G228400 [exp] 147 / 3e-38 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.014G111900 [exp] 144 / 7e-38 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.002G186600 [exp] 144 / 1e-37 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.011G007800 [exp] 143 / 4e-37 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.002G221600 [exp] 103 / 4e-24 AT2G04880 255 / 3e-81 zinc-dependent activator protein-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10016682 pacid=23149132 polypeptide=Lus10016682 locus=Lus10016682.g ID=Lus10016682.BGIv1.0 annot-version=v1.0 ATGGATCATAATAATGATCGAGAACACAGGCGCCAGAAGCAGCAAGCACCTGATTCTAAGGTTGCTGCAGCCATGGAATTAGATCAAGAGCAACCACCAG ATGATGATGATGACGACGACCAGAATTCGTCTATTGATCAGTTATCTAATAATTATCTGCAAGATACCAACAACAACAAGATGGACGATCAGCAGTTGTT GTGTGGTTTGGAGACGGAGATGAGAGGAATGAGAGAGGAGAACAGATTGTTGAGGGAAGTAGTTGAGAAGACTGCCAAAGACTACTACCGCCTCCAGATG AAATTGACCACCCTCCTCCTCCACCAACACAAGAACAGTTATTGCACCCCAGACTCCCAGGAGGATCCGCAATTATACCTGTCCCTTGGTGATCAGAAAG TAGTAGTTGATGATGATGACCGCCATGATGGAGAAGAAGGAGCAGTTAATAACAAGCCCAGTTCCAAGTTGAAAAGAAGAGTAATAGATGATGATGATGA CGAATTGGGACTTTCACTGAAGCTCCAAACAACACCTCTAAGTCGCCATCATCAACAGCAAGAAGAAGACGAAGATAAGTATAAAGTAGTAGACAGTAGT GGTACTGGAAAGAGTAGTAATTATAATACTGTTGAGCTTCAGAGGATCAACCATCATCATCATACTCTTGATCTTGATCTATTATCTCCGTCCACCTCCA ATATTAATGCTGCTGCTCATCTTTCTGCTACTACTGCTCCTTGTTCTAAATCTCCTTCTTCTCCACCGAACCGGAAAGCTAGGGTTTCTGTCAGAGCCAG ATGCCAATACTCAACTATGAATGACGGGGGGCAATGGAGGAAATACGGTCAGAAAATAGCAAAAGGGAATCCATGCCCTCGTGCTTATTATCGCTGCACC GTCGCTAATGCCTGCCCTGTCCGCAAACAGGTGCAAAGATGCCAAGATGACATGTCAATTCTCATAACAACCTACGAAGGGACCCACAACCATCCCATGC CGCCGGGAACCACCGGTGCCGCAACCTCCTTCATGCTACTCGACTCCTCCGCGGCCGACACTAGTCCGCCGCAGATCAGCCTCTCTGCGGCCCCCACAAC TGCCAACTTCATCTTCCCGTTCAACCAACAGTACCAACAAATGACGTTCAACTCCACCACTCCCGCGGCACGTCGCCATCCAACGCTTCCAACAACCATC CTGAATTCCTCATCAATGCACCGAACCACATCCGCGCCGTCAAGATTCAGCGTCGTCGATGGTGAGCTGGCTGACAACGTCAGCGCCGCCATTGCTGCTG ATCCTAAATTCAAGGCGGCGGGGGGAGGCCGCCATCGCACGTCTCCGCCATTTCATCGCTCATTACTAAAGAAGCTTCTACTTCTGCTACTGCAGCAGCT GCCACTACTCCCTAATTAA
AA sequence Show only first row Show all	>Lus10016682 pacid=23149132 polypeptide=Lus10016682 locus=Lus10016682.g ID=Lus10016682.BGIv1.0 annot-version=v1.0 MDHNNDREHRRQKQQAPDSKVAAAMELDQEQPPDDDDDDDQNSSIDQLSNNYLQDTNNNKMDDQQLLCGLETEMRGMREENRLLREVVEKTAKDYYRLQM KLTTLLLHQHKNSYCTPDSQEDPQLYLSLGDQKVVVDDDDRHDGEEGAVNNKPSSKLKRRVIDDDDDELGLSLKLQTTPLSRHHQQQEEDEDKYKVVDSS GTGKSSNYNTVELQRINHHHHTLDLDLLSPSTSNINAAAHLSATTAPCSKSPSSPPNRKARVSVRARCQYSTMNDGGQWRKYGQKIAKGNPCPRAYYRCT VANACPVRKQVQRCQDDMSILITTYEGTHNHPMPPGTTGAATSFMLLDSSAADTSPPQISLSAAPTTANFIFPFNQQYQQMTFNSTTPAARRHPTLPTTI LNSSSMHRTTSAPSRFSVVDGELADNVSAAIAADPKFKAAGGGRHRTSPPFHRSLLKKLLLLLLQQLPLLPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	0	1
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	1.4	0.9785
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10020673 [exp]	1.4	0.9748
AT5G24070			Peroxidase superfamily protein...		Lus10025586 [exp]	2.4	0.9642
AT2G32235			unknown protein		Lus10013126 [exp]	3.6	0.9504
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041975 [exp]	4.1	0.9476
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	4.7	0.9520
AT1G73160			UDP-Glycosyltransferase superf...		Lus10032187 [exp]	5.3	0.9566
AT4G39900			unknown protein		Lus10024045 [exp]	6.0	0.9546
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	6.2	0.9469
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10009992 [exp]	6.3	0.9631

Compare expression of checked genes

Lus10016682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.